BAC Information

Click to search

BAC

Clone NameB6Ng01-307A16
Chromosome8 (Build37)
Map Location 49,734,037 - 49,823,215
singlet/doubletdoublet
Overlap geneOdz3
Upstream geneIng2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd
Downstream gene2900073C17Rik, LOC100039866, 4930555F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307A16.bB6Ng01-307A16.g
ACCGA099918GA099919
length1,1091,130
definitionB6Ng01-307A16.b B6Ng01-307A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,822,112 - 49,823,215)(49,734,037 - 49,735,174)
sequence
gaattcacatcctcaggctgggtacagcccacagcagtgtggagatggct
tcctgatgctttcgtccctccgacctcctgagccacagagccaccatgcc
ttccacccccattctccttctgtttttttaaggccctcattttgggtagt
tactgaagctttaagacagggtcggaaaaagaaattctcatttaaaattt
tctaaaagaggataagatgagaatatttcctaagagtattagtcggttta
aaaggacaaattggaaagtcattttttactgatgtctagcactgttcaag
tatggacacctagaggagaggttcagatatgtcttacccttccagggctt
tctaaacagcagaaagctgcggttaactgagcagaatctttcttatttag
tagatgttaaagagaaagtgctaatccttttgaagtgcaatttttttcac
ttaaacatattattagctggagaaattcggacatgtgaataaaaaaaaac
ctctattgctttgctcatgatctatgatttccactaacatatgaacttta
gttatcatatgattttatgttttcagtttcagatatccagaggtgtctca
ctagaacaatcagtgaagataatataacgaatgtctctgtgcccattact
ccgatgaacgactagctaggctactacactgacagaatcctggcgactca
gtgctctgggttttgatggtgtttacacacagtgtgtatatgtgtaaaca
tgggcaggcatgtcgctaaggcagttcaacctgtgttcacataacaaagg
actgaagctgcaagaacattggaaagtaacagatttgaatacaatagaaa
agagttcattcgtactataaactgccaggcttgggatattaatttaaagt
ttagacctttaatttttgtgtcacctcacaagataacagccccctgagac
tacactggcttctcccttccttgtcttagatgaacccatttcctttgtat
tgggatggagctcctaagattgtgtgagcgtacagggctgcggcagtagc
cccccaagccacacagctcaataaatatttttcagaacatttaacctgaa
gtagtcact

gaattctctacttcccgaaccaataacttgaaacattttccaagttaatg
actttttactcgactgccatcttgatataaaatctacatggaaggaaagc
agacagctacagtccttaattgctctctaggtaggtaaacagagcttgct
ttgcagctaaatatcccgcacatcatccttatggaaatacggacaaccca
aaccccagaactatttgaccctctgcagtcggtgactcacaagaactcaa
atctcctcaggctagtcctaaaatttaaactataaagcaaacacaacagc
agagaccgccgctggatatcttccactgaactacaaggtttatttttgtt
tccagaaggacactgagctccacttcagatgcatctacgttaaagccacc
cacgagttcggctgggatgtctttcctacatatatatctgccagggtgtt
catgatgtgacctaaatggtgatttctggaccagagacaggcttagtggc
acatgctaggcacaggtaaggtgcaagaagagacacttggcactaaaaag
ggagatggatggtttatgcaaatgtgagagagccctcaacgtatactgac
aaacaacaactatagagggccatagaatttaggtattcactttcagatcc
ttgcattacctggggaagctgttgcttactggtgcagtctgctgccattg
cacactgcttcgcccagacttccaaccctcctgccggtgatccctcttcg
gggttaggcatgcctgagttcgaggaccctctgcttgaatgagctttccc
ttgggaagaagtaatcatcaggctggagtaattagtctatcaaagaattt
ccctgtaggacaggccatccttaataagaaacacatgcagttttgacaaa
tatagaggagacagagggaagaaaggttcctggcggagagagagacagct
ggtagggatgaaagagtatggaagttgtgttgagctggctttgctagaga
ctggggggggcgggtgtgacagaaaggagtagaacagagagaacacttta
gagagaaccacgaaggatagccttgttgagctctgggtcaggttaccagg
tagacttagcttcggattctcttgcagtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_49822112_49823215
seq2: B6Ng01-307A16.b_44_1152 (reverse)

seq1  AGTGACTTACTCA-GTTAAATG-TCTG-AAAATATTTA-TGAGCTGTGT-  45
      |||||||   ||| |||||||| |||| |||||||||| |||||||||| 
seq2  AGTGACTACTTCAGGTTAAATGTTCTGAAAAATATTTATTGAGCTGTGTG  50

seq1  GCTTTGGGGGCTACTTGCCGCAGCCCTGTACGCTCACACAATCTTAGGAG  95
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCTTGGGGGGCTAC-TGCCGCAGCCCTGTACGCTCACACAATCTTAGGAG  99

seq1  CTCCATCCCAATACAAGGGAAATGGGTTCATCTAAGACAAGGAAGGGAGA  145
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCCATCCCAATACAAAGGAAATGGGTTCATCTAAGACAAGGAAGGGAGA  149

seq1  AGCCAGTGTAGTCTCAGGGGGCTGTTATCTTTGTGAGGTGACACAAAAAT  195
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCCAGTGTAGTCTCAGGGGGCTGTTATC-TTGTGAGGTGACACAAAAAT  198

seq1  T-AAGGTCTAAACTTTAAATTAATAT-CCAAGCCTGGCAGTTTATAGTAC  243
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAAAGGTCTAAACTTTAAATTAATATCCCAAGCCTGGCAGTTTATAGTAC  248

seq1  GAATGAACTCTTTTCTATTGTATTCAAATCTGTTACTTTCCAATGTTCTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAACTCTTTTCTATTGTATTCAAATCTGTTACTTTCCAATGTTCTT  298

seq1  GCAGCTTCAGTCCTTTGTTATGTGAACACAGGTTGAACTGCCTTAGCGAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTCAGTCCTTTGTTATGTGAACACAGGTTGAACTGCCTTAGCGAC  348

seq1  ATGCCTGCCCATGTTTACACATATACACACTGTGTGTAAACACCATCAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGCCCATGTTTACACATATACACACTGTGTGTAAACACCATCAAA  398

seq1  ACCCAGAGCACTGAGTCGCCAGGATTCTGTCAGTGTAGTAGCCTAGCTAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAGCACTGAGTCGCCAGGATTCTGTCAGTGTAGTAGCCTAGCTAG  448

seq1  TCGTTCATCGGAGTAATGGGCACAGAGACATTCGTTATATTATCTTCACT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCATCGGAGTAATGGGCACAGAGACATTCGTTATATTATCTTCACT  498

seq1  GATTGTTCTAGTGAGACACCTCTGGATATCTGAAACTGAAAACATAAAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTCTAGTGAGACACCTCTGGATATCTGAAACTGAAAACATAAAAT  548

seq1  CATATGATAACTAAAGTTCATATGTTAGTGGAAATCATAGATCATGAGCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGATAACTAAAGTTCATATGTTAGTGGAAATCATAGATCATGAGCA  598

seq1  AAGCAATAGAGGTTTTTTTTTATTCACATGTCCGAATTTCTCCAGCTAAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATAGAGGTTTTTTTTTATTCACATGTCCGAATTTCTCCAGCTAAT  648

seq1  AATATGTTTAAGTGAAAAAAATTGCACTTCAAAAGGATTAGCACTTTCTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTTAAGTGAAAAAAATTGCACTTCAAAAGGATTAGCACTTTCTC  698

seq1  TTTAACATCTACTAAATAAGAAAGATTCTGCTCAGTTAACCGCAGCTTTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATCTACTAAATAAGAAAGATTCTGCTCAGTTAACCGCAGCTTTC  748

seq1  TGCTGTTTAGAAAGCCCTGGAAGGGTAAGACATATCTGAACCTCTCCTCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTAGAAAGCCCTGGAAGGGTAAGACATATCTGAACCTCTCCTCT  798

seq1  AGGTGTCCATACTTGAACAGTGCTAGACATCAGTAAAAAATGACTTTCCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCCATACTTGAACAGTGCTAGACATCAGTAAAAAATGACTTTCCA  848

seq1  ATTTGTCCTTTTAAACCGACTAATACTCTTAGGAAATATTCTCATCTTAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCCTTTTAAACCGACTAATACTCTTAGGAAATATTCTCATCTTAT  898

seq1  CCTCTTTTAGAAAATTTTAAATGAGAATTTCTTTTTCCGACCCTGTCTTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTAGAAAATTTTAAATGAGAATTTCTTTTTCCGACCCTGTCTTA  948

seq1  AAGCTTCAGTAACTACCCAAAATGAGGGCCTTAAAAAAACAGAAGGAGAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCAGTAACTACCCAAAATGAGGGCCTTAAAAAAACAGAAGGAGAA  998

seq1  TGGGGGTGGAAGGCATGGTGGCTCTGTGGCTCAGGAGGTCGGAGGGACGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTGGAAGGCATGGTGGCTCTGTGGCTCAGGAGGTCGGAGGGACGA  1048

seq1  AAGCATCAGGAAGCCATCTCCACACTGCTGTGGGCTGTACCCAGCCTGAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCAGGAAGCCATCTCCACACTGCTGTGGGCTGTACCCAGCCTGAG  1098

seq1  GATGTGAATTC  1104
      |||||||||||
seq2  GATGTGAATTC  1109


seq1: chr8_49734037_49735174
seq2: B6Ng01-307A16.g_66_1195

seq1  GAATTCTCTACTTCCCGAACCAATAACTTGAAACATTTTCCAAGTTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACTTCCCGAACCAATAACTTGAAACATTTTCCAAGTTAATG  50

seq1  ACTTTTTACTCGACTGCCATCTTGATATAAAATCTACATGGAAGGAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTACTCGACTGCCATCTTGATATAAAATCTACATGGAAGGAAAGC  100

seq1  AGACAGCTACAGTCCTTAATTGCTCTCTAGGTAGGTAAACAGAGCTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTACAGTCCTTAATTGCTCTCTAGGTAGGTAAACAGAGCTTGCT  150

seq1  TTGCAGCTAAATATCCCGCACATCATCCTTATGGAAATACGGACAACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCTAAATATCCCGCACATCATCCTTATGGAAATACGGACAACCCA  200

seq1  AACCCCAGAACTATTTGACCCTCTGCAGTCGGTGACTCACAAGAACTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAGAACTATTTGACCCTCTGCAGTCGGTGACTCACAAGAACTCAA  250

seq1  ATCTCCTCAGGCTAGTCCTAAAATTTAAACTATAAAGCAAACACAACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTCAGGCTAGTCCTAAAATTTAAACTATAAAGCAAACACAACAGC  300

seq1  AGAGACCGCCGCTGGATATCTTCCACTGAACTACAAGGTTTATTTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCGCCGCTGGATATCTTCCACTGAACTACAAGGTTTATTTTTGTT  350

seq1  TCCAGAAGGACACTGAGCTCCACTTCAGATGCATCTACGTTAAAGCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAGGACACTGAGCTCCACTTCAGATGCATCTACGTTAAAGCCACC  400

seq1  CACGAGTTCGGCTGGGATGTCTTTCCTACATATATATCTGCCAGGGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGTTCGGCTGGGATGTCTTTCCTACATATATATCTGCCAGGGTGTT  450

seq1  CATGATGTGACCTAAATGGTGATTTCTGGACCAGAGACAGGCTTAGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTGACCTAAATGGTGATTTCTGGACCAGAGACAGGCTTAGTGGC  500

seq1  ACATGCTAGGCACAGGTAAGGTGCAAGAAGAGACACTTGGCACTAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTAGGCACAGGTAAGGTGCAAGAAGAGACACTTGGCACTAAAAAG  550

seq1  GGAGATGGATGGTTTATGCAAATGTGAGAGAGCCCTCAACGTATACTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGATGGTTTATGCAAATGTGAGAGAGCCCTCAACGTATACTGAC  600

seq1  AAACAACAACTATAGAGGGCCATAGAATTTAGGTATTCACTTTCAGATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAACTATAGAGGGCCATAGAATTTAGGTATTCACTTTCAGATCC  650

seq1  TTGCATTACCTGGGGAAGCTGTTGCTTACTGGTGCAGTCTGCTGCCATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTACCTGGGGAAGCTGTTGCTTACTGGTGCAGTCTGCTGCCATTG  700

seq1  CACACTGCTTCGCCCAGACTTCCAACCCTCCTGCCGGTGATCCCTCTTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGCTTCGCCCAGACTTCCAACCCTCCTGCCGGTGATCCCTCTTCG  750

seq1  GGGTTAGGCATGCCTGAGTTCGAGGACCCTCTGCTTGAATGAGCTTTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGGCATGCCTGAGTTCGAGGACCCTCTGCTTGAATGAGCTTTCCC  800

seq1  TTGGGAAGAAGTAATCATCAGGCTGGAGTAATTAGTCTATCAAAGAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGAAGTAATCATCAGGCTGGAGTAATTAGTCTATCAAAGAATTT  850

seq1  CCCTGTAGGACAGGCCATCCTTAATAAGAAACACATGCAGTTTTGACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAGGACAGGCCATCCTTAATAAGAAACACATGCAGTTTTGACAAA  900

seq1  TATAGAGGAGACAGAGGGAAGAAAGGTTCCTGGCGGAGAGAAGAGACAGC  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATAGAGGAGACAGAGGGAAGAAAGGTTCCTGGCGGAGAG-AGAGACAGC  949

seq1  TGGTAGGGATGAAAGAGTATGGAAAGTTGTGTTGAGCTGGCTTTGGCTTA  1000
      |||||||||||||||||||||| ||||||||||||||||||||| |||  
seq2  TGGTAGGGATGAAAGAGTATGG-AAGTTGTGTTGAGCTGGCTTT-GCT--  995

seq1  GGGAAGGACTGGGGGGCG-GGGTGTGACAGAAAGGAGTAGAAACAGAAGA  1049
         |  |||||||||| | ||||||||||||||||||||| ||||| |||
seq2  ---AGAGACTGGGGGGGGCGGGTGTGACAGAAAGGAGTAG-AACAG-AGA  1040

seq1  AGACACTTAAGAGAGGACCACGAAGGATAAGCACTTG-TGAGCTCTGTG-  1097
        |||||| |||||| |||||||||||| ||| |||| ||||||||| | 
seq2  GAACACTTTAGAGAGAACCACGAAGGAT-AGC-CTTGTTGAGCTCTGGGT  1088

seq1  CAGGTAACAAGGAAGACTTAGCTTCGGATTCT-TTGCAGTAG  1138
      ||||| || ||| ||||||||||||||||||| |||||||||
seq2  CAGGTTACCAGGTAGACTTAGCTTCGGATTCTCTTGCAGTAG  1130


| Home | SequenceCutter | Blast | Download |