BAC Information

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BAC

Clone NameB6Ng01-307N13
Chromosome8 (Build37)
Map Location 97,077,183 - 97,228,867
singlet/doubletdoublet
Overlap geneCpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp
Upstream geneGnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557
Downstream geneCcl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307N13.bB6Ng01-307N13.g
ACCGA100507GA100508
length888992
definitionB6Ng01-307N13.b B6Ng01-307N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,227,981 - 97,228,867)(97,077,183 - 97,078,141)
sequence
gaattcactatgtagactagaactcacacagagatcaacctgcttctgcc
tcctgagtgatgagattaaaagcacgtatggctcttagtcgttatttttt
tgtttgtttttatttaccatcgttattattgtgggcacggtatgccatcc
ttatttatacctttggaaataacatgaggaacagcttcttttgggctgag
gttttctgtttccgtgagcaagtctgaggtttgagaagggggcgagaagg
aacagaaaaaggcaaggggcggagaggagcgatgagtcacgaaataactg
aaagcgagacggcgcggggatagggggcatctgacctgcatactattgtg
tgtcaggcactgtgtgggcactgaagacacggccaaaacccggatcagac
cgtgtcgctgcgggattcatctaagctagagtctgaaacaaaccagtaac
cctgcaaatgggtcgctgaggttttgatcacctttaggcaaggggaccag
gattttatgacgtcaaccgggtcagggtagcaaaggctaagcaccgttag
ctgccgcgaatatacggacctgattgccacgtaccataaagacacgaagg
tggggatgcaaaaaaaaaaaaaaaaaaaaaaagcaaggatgctggcagat
ccgcaggaaacaaggatgaagggcacagtttctgcattcatttaaaagaa
actgcaggtctggcgccttctgagttttctagcgagtggcgagtgccacc
tgccggtcattcgtagtattacatagggtgcttgctccgcccagtgcaaa
aaatcccagaagctacttcattacgcatgcgcacattgagaggcttacaa
agaggactgactaggcgctctgtttccagtttgtcagg
gaattccatcctggaatggtggggaagggaaggagcagacacccccaccc
ccacgccccgtcaccccactcccacccccaccccttctcacagccacgac
ctttcagattgcagcccaagagctgtcagacaaccgagtcatcacactga
gcctggctggcaggaaactggataagaaggtaagccaggcagagaggggc
ttccatgaacaacagggtttcccaccacagagccctggggctcggtctct
ggctccatcattttcatttcctgacacgggtcgggccaagcactgaacca
ctcaagtcagactttcgccaactctcggggggaagtgtcctgccacttag
agggaggcagcttgagaccggaaactttcttgtggcccccttctccccac
agggctccactgtgaccctccagagtccttccccctcatcccctttggcc
accaggttagaccagaccctcttgctctcctcagctgtattaatgttctc
attttcaagtgctgaggacgggacccaggactctgctgtggagtcacaat
accgggtgccggggataaaccaggcatcttccagtctcagacccactgcc
ctctcttctcaccacctgggacccctacagtgaacattgtcactgtgtcc
ttcccacattctgtccttctacaacccttccctggagacacagtggcagt
gcccctcggttgcctgtggtcactcatgctgctgtcccgtacattcttcc
ttgacccgctctgtccccttcacttctgtgtaacatcttttagatgtctt
ttttttttttttaatgtacattaatgaattttctagaggcccaccatgcc
ctttggtggactggcaccatagatttattttattcattacctttggaggg
gtcccgagacaacttattggggacattatggtcagagaacagccttatgt
agtcccgcttcttcttcctttccacccatggtggggttcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_97227981_97228867
seq2: B6Ng01-307N13.b_47_934 (reverse)

seq1  CCTGAC-AACTGGAAACAGAGCGCCTAGTCAGTCCTCTTTGTAAGCCTCT  49
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAAACTGGAAACAGAGCGCCTAGTCAGTCCTCTTTGTAAGCCTCT  50

seq1  CAATGTGCGCATGCGTAATGAAGTAGCTTCTGGGATTTTTTGCACTGGGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGCGCATGCGTAATGAAGTAGCTTCTGGGATTTTTTGCACTGGGC  100

seq1  GGAGCAAGCACCCTATGTAATACTACGAATGACCGGCAGGTGGCACTCGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAGCACCCTATGTAATACTACGAATGACCGGCAGGTGGCACTCGC  150

seq1  CACTCGCTAGAAAACTCAGAAGGCGCCAGACCTGCAGTTTCTTTTAAATG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGCTAGAAAACTCAGAAGGCGCCAGACCTGCAGTTTCTTTTAAATG  200

seq1  AATGCAGAAACTGTGCCCTTCATCCTTGTTTCCTGCGGATCTGCCAGCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGAAACTGTGCCCTTCATCCTTGTTTCCTGCGGATCTGCCAGCAT  250

seq1  CCTTGCTTTTTTTTTTTTTTTTTTTTTTTGCATCCCCACCTTCGTGTCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTTTTTTTTTTTTTTTTTTTTTTGCATCCCCACCTTCGTGTCTT  300

seq1  TATGGTACGTGGCAATCAGGTCCGTATATTCGCGGCAGCTAACGGTGCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTACGTGGCAATCAGGTCCGTATATTCGCGGCAGCTAACGGTGCTT  350

seq1  AGCCTTTGCTACCCTGACCCGGTTGACGTCATAAAATCCTGGTCCCCTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTGCTACCCTGACCCGGTTGACGTCATAAAATCCTGGTCCCCTTG  400

seq1  CCTAAAGGTGATCAAAACCTCAGCGACCCATTTGCAGGGTTACTGGTTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGGTGATCAAAACCTCAGCGACCCATTTGCAGGGTTACTGGTTTG  450

seq1  TTTCAGACTCTAGCTTAGATGAATCCCGCAGCGACACGGTCTGATCCGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGACTCTAGCTTAGATGAATCCCGCAGCGACACGGTCTGATCCGGG  500

seq1  TTTTGGCCGTGTCTTCAGTGCCCACACAGTGCCTGACACACAATAGTATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCCGTGTCTTCAGTGCCCACACAGTGCCTGACACACAATAGTATG  550

seq1  CAGGTCAGATGCCCCCTATCCCCGCGCCGTCTCGCTTTCAGTTATTTCGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAGATGCCCCCTATCCCCGCGCCGTCTCGCTTTCAGTTATTTCGT  600

seq1  GACTCATCGCTCCTCTCCGCCCCTTGCCTTTTTCTGTTCCTTCTCGCCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATCGCTCCTCTCCGCCCCTTGCCTTTTTCTGTTCCTTCTCGCCCC  650

seq1  CTTCTCAAACCTCAGACTTGCTCACGGAAACAGAAAACCTCAGCCCAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAACCTCAGACTTGCTCACGGAAACAGAAAACCTCAGCCCAAAA  700

seq1  GAAGCTGTTCCTCATGTTATTTCCAAAGGTATAAATAAGGATGGCATACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGTTCCTCATGTTATTTCCAAAGGTATAAATAAGGATGGCATACC  750

seq1  GTGCCCACAATAATAACGATGGTAAATAAAAACAAACAAAAAAATAACGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCACAATAATAACGATGGTAAATAAAAACAAACAAAAAAATAACGA  800

seq1  CTAAGAGCCATACGTGCTTTTAATCTCATCACTCAGGAGGCAGAAGCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGCCATACGTGCTTTTAATCTCATCACTCAGGAGGCAGAAGCAGG  850

seq1  TTGATCTCTGTGTGAGTTCTAGTCTACATAGTGAATTC  887
      ||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTCTGTGTGAGTTCTAGTCTACATAGTGAATTC  888

seq1: chr8_97077183_97078141
seq2: B6Ng01-307N13.g_64_1039

seq1  GAATTCCATCCTGGAATGGTGGGGAAGGGAAGGAGCAGACACCCCCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCTGGAATGGTGGGGAAGGGAAGGAGCAGACACCCCCACCC  50

seq1  CCACGCCCCGTCACCCCACTCCCACCCCCACCCCTTCTCACAGCCACGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCCCGTCACCCCACTCCCACCCCCACCCCTTCTCACAGCCACGAC  100

seq1  CTTTCAGATTGCAGCCCAAGAGCTGTCAGACAACCGAGTCATCACACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGATTGCAGCCCAAGAGCTGTCAGACAACCGAGTCATCACACTGA  150

seq1  GCCTGGCTGGCAGGAAACTGGATAAGAAGGTAAGCCAGGCAGAGAGGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCTGGCAGGAAACTGGATAAGAAGGTAAGCCAGGCAGAGAGGGGC  200

seq1  TTCCATGAACAACAGGGTTTCCCACCACAGAGCCCTGGGGCTCGGTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGAACAACAGGGTTTCCCACCACAGAGCCCTGGGGCTCGGTCTCT  250

seq1  GGCTCCATCATTTTCATTTCCTGACACGGGTCGGGCCAAGCACTGAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCATCATTTTCATTTCCTGACACGGGTCGGGCCAAGCACTGAACCA  300

seq1  CTCAAGTCAGACTTTCGCCAACTCTCGGGGGGAAGTGTCCTGCCACTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTCAGACTTTCGCCAACTCTCGGGGGGAAGTGTCCTGCCACTTAG  350

seq1  AGGGAGGCAGCTTGAGACCGGAAACTTTCTTGTGGCCCCCTTCTCCCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGCAGCTTGAGACCGGAAACTTTCTTGTGGCCCCCTTCTCCCCAC  400

seq1  AGGGCTCCACTGTGACCCTCCAGAGTCCTTCCCCCTCATCCCCTTTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCCACTGTGACCCTCCAGAGTCCTTCCCCCTCATCCCCTTTGGCC  450

seq1  ACCAGGTTAGACCAGACCCTCTTGCTCTCCTCAGCTGTATTAATGTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTTAGACCAGACCCTCTTGCTCTCCTCAGCTGTATTAATGTTCTC  500

seq1  ATTTTCAAGTGCTGAGGACGGGACCCAGGACTCTGCTGTGGAGTCACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAGTGCTGAGGACGGGACCCAGGACTCTGCTGTGGAGTCACAAT  550

seq1  ACCGGGTGCCGGGGATAAACCAGGCATCTTCCAGTCTCAGACCCACTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGTGCCGGGGATAAACCAGGCATCTTCCAGTCTCAGACCCACTGCC  600

seq1  CTCTCTTCTCACCACCTGGGACCCCTACAGTGAACATTGTCACTGTGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCTCACCACCTGGGACCCCTACAGTGAACATTGTCACTGTGTCC  650

seq1  TTCCCACATTCTGTCCTTCTACAACCCTTCCCTGGAGACACAGTGGCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACATTCTGTCCTTCTACAACCCTTCCCTGGAGACACAGTGGCAGT  700

seq1  GCCCCTCGGTTGCCTGTGGTCACTCATGCTGCTGTCCCGTACATTCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCGGTTGCCTGTGGTCACTCATGCTGCTGTCCCGTACATTCTTCC  750

seq1  TTGACCCGCTCTGTCCCCTTCACTTCTGTGTAACATC-TTTAGATGTC-T  798
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  TTGACCCGCTCTGTCCCCTTCACTTCTGTGTAACATCTTTTAGATGTCTT  800

seq1  TTTTTTTTTTTTAATGTACATTAATGAA-TTTCTAGAGG-CCACCATGCC  846
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  TTTTTTTTTTTTAATGTACATTAATGAATTTTCTAGAGGCCCACCATGCC  850

seq1  CTTTGGT-GACTGGCACCATAGATTTA-TTTATTCATTACCTTTGGAGGG  894
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTTGGTGGACTGGCACCATAGATTTATTTTATTCATTACCTTTGGAGGG  900

seq1  GT-CCGAGACA--CTAT--GGGACA-TATGGTCAGAGAACAG-CTTATGT  937
      || ||||||||   |||  |||||| |||||||||||||||| |||||||
seq2  GTCCCGAGACAACTTATTGGGGACATTATGGTCAGAGAACAGCCTTATGT  950

seq1  AGT-CCGCT--CTCTTCC-TTCCACC  959
      ||| |||||   |||||| |||||||
seq2  AGTCCCGCTTCTTCTTCCTTTCCACC  976