BAC Information

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BAC

Clone NameB6Ng01-312P08
Chromosome8 (Build37)
Map Location 70,390,449 - 70,473,049
singlet/doubletdoublet
Overlap genePsd3
Upstream geneBC053440, LOC665453, Nat1, Nat2, LOC100041265, Nat3
Downstream geneSh2d4a, LOC665510, 4732435N03Rik, Ints10, Lpl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312P08.bB6Ng01-312P08.g
ACCGA104297GA104298
length1,1451,184
definitionB6Ng01-312P08.b B6Ng01-312P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,390,449 - 70,391,582)(70,471,877 - 70,473,049)
sequence
gaattcacttgggtgcctcctgaaaagaacaaaatgtttcagctccagaa
agacacctgcacactactaagaatgaggcacagaagtttaaaatttccac
atctatatgggggagaattagataatgttttctgctgtttgttaaatcct
acaaaacagaacactaagcaggtatatactagcatgagttcagccagggg
aaatgatacctaattgtgagttagggactgattatgagatgtactgattc
taagaccagaggagttgttataatttaacctaagcaaagctcacttagaa
caggcagccatatataatattattccatcaagtcaaaactagaactccaa
aaacaaaccagggggagtccaaactcaaaagcagctgagtctgccacata
gactagaagcagtgaatttaggaggccaggcatagtattctagcacttaa
agatcagaacatggcagacactgacaacataacataccaccacacttctg
taaaaataaaaaagtgtgttgttctaaaatgtacttatttacaaatatac
ttctgtataaaatcaccctgtagcagccaccctgtgatgatcctactaaa
ttctggctcgtgctgttgctcagacagggtattactacagtgtgccccca
aattgctatatatcttatttttagcttatagtttatagattatatcacca
tttgaggcttttttcctcaggatttaatcattataatgattacattagaa
ttatctatttctaactagattataaaacctatgagtttttatttatatcc
cacaaagataaagacctagtctctttattctctcatataagattttacag
ctgagaattgcagatagaggattaagtaaatttcctaaattaagactcat
gtttcagagaactgtccatcacatcactagacgtcagtgtctagcaacaa
actgaggcatatcatcattccatcacaacgaacaacaaggtccacagaac
tcaggagattagcaggaccctttattatttacaaacagactctgtacagt
tactttatttgatgactaccatttaatagaattattttcttcaaaagcct
gcctaataattacattttttctatattactttatgaaaacaaatt

gaattcatggcatagaaaatgcactaaacatgtttgttggcggcatagtg
cagtgcttagaggtcacaggcccatagctttacatttttcctctagttca
taaggtttgacttctcataagttccttaactgcacgccggaagtgcaatt
tctccatatgttaagttagggatgcaaatgttaactgtcctgagggatag
ctattgtaaaggctaactgaagtgcagcatgtgaaagcatttacatcgtt
tgtctgcactagggaaagctcaatacatgttaacttgggctgttctcttt
gtttaagttgtgcttccttccgtcagatactcaagaggacttggttaggg
aacactggtaaagcgtagagacgctcacgttgtgaacattcatggagctt
tgtggtcaggtgtcaggcagcatgtctatttctcatcctctagtcggtca
ttgccctgatgcagcctcccacgcacacgggtgagcagaggaggagtgcg
gataagcaagtgtagcctcgtcagtacttttgagaacgtttctggtttcg
ggcctgtgacgtcactccagttttagcatcttagactgttgggaccagga
caatctgtatgtgatacacaagaggtgctagatagaaaggacgctgttgg
gaacaggactatctgtatgtgatacacaagaggtgctaggtagaaaggac
tgctgaaattcaggcactgttcccgtgtactctccctcggtgaggtgcct
ctctgggcagtggtggctgtttttataggcttatctgtagctccagcttt
gcccttttgatctttttactatgagcctggcagcttgcagcagtatgaac
tatgcatcccttcttattttcctgatctgttattgtggatgatatctttt
tcatcattgagattaagcaaaatgtgtgggaaatgactagcacagagtaa
gtaccaaatgtatttttacttttccccaaatgctctattttctgctgtac
agtcaaaggggaggtttaaattatcattttcccaatagacttttttatgc
tgtagtgccattgtaaggtcttatgtctagactgttggtcctaaactttg
aataaaatacctttccctggacttgatccatgggtgttatacctgtaatc
ctcgacgtgggatttacagggcgcggggggaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_70390449_70391582
seq2: B6Ng01-312P08.b_47_1191

seq1  GAATTCACTTGGGTGCCTCCTGAAAAGAACAAAATGTTTCAGCTCCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGGGTGCCTCCTGAAAAGAACAAAATGTTTCAGCTCCAGAA  50

seq1  AGACACCTGCACACTACTAAGAATGAGGCACAGAAGTTTAAAATTTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCTGCACACTACTAAGAATGAGGCACAGAAGTTTAAAATTTCCAC  100

seq1  ATCTATATGGGGGAGAATTAGATAATGTTTTCTGCTGTTTGTTAAATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATGGGGGAGAATTAGATAATGTTTTCTGCTGTTTGTTAAATCCT  150

seq1  ACAAAACAGAACACTAAGCAGGTATATACTAGCATGAGTTCAGCCAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAGAACACTAAGCAGGTATATACTAGCATGAGTTCAGCCAGGGG  200

seq1  AAATGATACCTAATTGTGAGTTAGGGACTGATTATGAGATGTACTGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATACCTAATTGTGAGTTAGGGACTGATTATGAGATGTACTGATTC  250

seq1  TAAGACCAGAGGAGTTGTTATAATTTAACCTAAGCAAAGCTCACTTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCAGAGGAGTTGTTATAATTTAACCTAAGCAAAGCTCACTTAGAA  300

seq1  CAGGCAGCCATATATAATATTATTCCATCAAGTCAAAACTAGAACTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGCCATATATAATATTATTCCATCAAGTCAAAACTAGAACTCCAA  350

seq1  AAACAAACCAGGGGGAGTCCAAACTCAAAAGCAGCTGAGTCTGCCACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACCAGGGGGAGTCCAAACTCAAAAGCAGCTGAGTCTGCCACATA  400

seq1  GACTAGAAGCAGTGAATTTAGGAGGCCAGGCATAGTATTCTAGCACTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAAGCAGTGAATTTAGGAGGCCAGGCATAGTATTCTAGCACTTAA  450

seq1  AGATCAGAACATGGCAGACACTGACAACATAACATACCACCACACTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGAACATGGCAGACACTGACAACATAACATACCACCACACTTCTG  500

seq1  TAAAAATAAAAAAGTGTGTTGTTCTAAAATGTACTTATTTACAAATATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAAAAAGTGTGTTGTTCTAAAATGTACTTATTTACAAATATAC  550

seq1  TTCTGTATAAAATCACCCTGTAGCAGCCACCCTGTGATGATCCTACTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATAAAATCACCCTGTAGCAGCCACCCTGTGATGATCCTACTAAA  600

seq1  TTCTGGCTCGTGCTGTTGCTCAGACAGGGTATTACTACAGTGTGCCCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTCGTGCTGTTGCTCAGACAGGGTATTACTACAGTGTGCCCCCA  650

seq1  AATTGCTATATATCTTATTTTTAGCTTATAGTTTATAGATTATATCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTATATATCTTATTTTTAGCTTATAGTTTATAGATTATATCACCA  700

seq1  TTTGAGGCTTTTTTCCTCAGGATTTAATCATTATAATGATTACATTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCTTTTTTCCTCAGGATTTAATCATTATAATGATTACATTAGAA  750

seq1  TTATCTATTTCTAACTAGATTATAAAACCTATGAGTTTTTATTTATATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATTTCTAACTAGATTATAAAACCTATGAGTTTTTATTTATATCC  800

seq1  CACAAAGATAAAGACCTAGTCTCTTTATTCTCTCATATAAGATTTTACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGATAAAGACCTAGTCTCTTTATTCTCTCATATAAGATTTTACAG  850

seq1  CTGAGAATTGCAGATAGAGGATTAAGTAAATTTCCTAAATTAAGACTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATTGCAGATAGAGGATTAAGTAAATTTCCTAAATTAAGACTCAT  900

seq1  GTTTCAGAGAACTGTCCATCACATCACTAGACGTCAGTGTCTAGCAACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGAGAACTGTCCATCACATCACTAGACGTCAGTGTCTAGCAACAA  950

seq1  ACTGAGGCATATCATCATTCCATCACAACGAACAACAA-GTCCACAG-AC  998
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  ACTGAGGCATATCATCATTCCATCACAACGAACAACAAGGTCCACAGAAC  1000

seq1  TCA-GAGATTAGCAGGACCCTTTAT--ATTACAAACAAGACTCTGTACAG  1045
      ||| |||||||||||||||||||||   |||||||| |||||||||||||
seq2  TCAGGAGATTAGCAGGACCCTTTATTATTTACAAAC-AGACTCTGTACAG  1049

seq1  TTACTTTTATTTGATGACTACCA-TTAATAGAAT--ATTTCTTCAAAAG-  1091
      |||| |||||||||||||||||| ||||||||||   |||||||||||| 
seq2  TTAC-TTTATTTGATGACTACCATTTAATAGAATTATTTTCTTCAAAAGC  1098

seq1  CTGC----TATATACATTTTTTCTATA-TACTTTATGAAAAACAAATT  1134
      ||||    ||  ||||||||||||||| ||||||||| ||||||||||
seq2  CTGCCTAATAATTACATTTTTTCTATATTACTTTATG-AAAACAAATT  1145


seq1: chr8_70471877_70473049
seq2: B6Ng01-312P08.g_69_1252 (reverse)

seq1  GATTCCCCC----GCCTGTAATTCCCACGTCTGAGATTACAGGTAT-ACA  45
      |||||||||     ||||||| |||||||||   |||||||||||| |||
seq2  GATTCCCCCCGCGCCCTGTAAATCCCACGTCGAGGATTACAGGTATAACA  50

seq1  CCCCATGCTCAGCTCAAGG--AAAGTATTTTAATCAAAAGTTTTAGAACC  93
      |||   | |||  || |||  || |||||||| || |||||||  || | 
seq2  CCCATGGATCAAGTCCAGGGAAAGGTATTTTATTC-AAAGTTTAGGACCA  99

seq1  ACAGTCTAGACATAAGACCTTTACAAT-GCACTACAGCAT-AAAAAGTCT  141
      ||||||||||||||||||| ||||||| |||||||||||| |||||||| 
seq2  ACAGTCTAGACATAAGACC-TTACAATGGCACTACAGCATAAAAAAGTC-  147

seq1  TATTTGG-AAATGATAATT--AAACTCCCC-TTGACTGTAACAGCAG-AA  186
      |||| || |||||||||||  || |||||| |||||||| ||||||| ||
seq2  TATTGGGAAAATGATAATTTAAACCTCCCCTTTGACTGT-ACAGCAGAAA  196

seq1  ATAGAGCATTTTGGGGGAAAGTAAAAATACATTTGGTACTTACTCTGTGC  236
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  ATAGAGCA-TTTGGGGAAAAGTAAAAATACATTTGGTACTTACTCTGTGC  245

seq1  TAGTCATTT-CCACACATTTTGCTTAATCTCAATGATGAAAAAGATATCA  285
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATTTCCCACACATTTTGCTTAATCTCAATGATGAAAAAGATATCA  295

seq1  TCCACAATAACAGATCAGG-AAATAAGAAGGGATGCATAGTTCATACTGC  334
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCCACAATAACAGATCAGGAAAATAAGAAGGGATGCATAGTTCATACTGC  345

seq1  TGCAAGCTGCCAGGCTCATAGTAAAAAGATCAAAAGGGCAAAGCTGGAGC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCTGCCAGGCTCATAGTAAAAAGATCAAAAGGGCAAAGCTGGAGC  395

seq1  TACAGATAAGCCTATAAAAACAGCCACCACTGCCCAGAGAGGCACCTCAC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATAAGCCTATAAAAACAGCCACCACTGCCCAGAGAGGCACCTCAC  445

seq1  CGAGGGAGAGTACACGGGAACAGTGCCTGAATTTCAGCAGTCCTTTCTAC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGAGAGTACACGGGAACAGTGCCTGAATTTCAGCAGTCCTTTCTAC  495

seq1  CTAGCACCTCTTGTGTATCACATACAGATAGTCCTGTTCCCAACAGCGTC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACCTCTTGTGTATCACATACAGATAGTCCTGTTCCCAACAGCGTC  545

seq1  CTTTCTATCTAGCACCTCTTGTGTATCACATACAGATTGTCCTGGTCCCA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATCTAGCACCTCTTGTGTATCACATACAGATTGTCCTGGTCCCA  595

seq1  ACAGTCTAAGATGCTAAAACTGGAGTGACGTCACAGGCCCGAAACCAGAA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTAAGATGCTAAAACTGGAGTGACGTCACAGGCCCGAAACCAGAA  645

seq1  ACGTTCTCAAAAGTACTGACGAGGCTACACTTGCTTATCCGCACTCCTCC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTCTCAAAAGTACTGACGAGGCTACACTTGCTTATCCGCACTCCTCC  695

seq1  TCTGCTCACCCGTGTGCGTGGGAGGCTGCATCAGGGCAATGACCGACTAG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCACCCGTGTGCGTGGGAGGCTGCATCAGGGCAATGACCGACTAG  745

seq1  AGGATGAGAAATAGACATGCTGCCTGACACCTGACCACAAAGCTCCATGA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAGAAATAGACATGCTGCCTGACACCTGACCACAAAGCTCCATGA  795

seq1  ATGTTCACAACGTGAGCGTCTCTACGCTTTACCAGTGTTCCCTAACCAAG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCACAACGTGAGCGTCTCTACGCTTTACCAGTGTTCCCTAACCAAG  845

seq1  TCCTCTTGAGTATCTGACGGAAGGAAGCACAACTTAAACAAAGAGAACAG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTGAGTATCTGACGGAAGGAAGCACAACTTAAACAAAGAGAACAG  895

seq1  CCCAAGTTAACATGTATTGAGCTTTCCCTAGTGCAGACAAACGATGTAAA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTTAACATGTATTGAGCTTTCCCTAGTGCAGACAAACGATGTAAA  945

seq1  TGCTTTCACATGCTGCACTTCAGTTAGCCTTTACAATAGCTATCCCTCAG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCACATGCTGCACTTCAGTTAGCCTTTACAATAGCTATCCCTCAG  995

seq1  GACAGTTAACATTTGCATCCCTAACTTAACATATGGAGAAATTGCACTTC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTAACATTTGCATCCCTAACTTAACATATGGAGAAATTGCACTTC  1045

seq1  CGGCGTGCAGTTAAGGAACTTATGAGAAGTCAAACCTTATGAACTAGAGG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGTGCAGTTAAGGAACTTATGAGAAGTCAAACCTTATGAACTAGAGG  1095

seq1  AAAAATGTAAAGCTATGGGCCTGTGACCTCTAAGCACTGCACTATGCCGC  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTAAAGCTATGGGCCTGTGACCTCTAAGCACTGCACTATGCCGC  1145

seq1  CAACAAACATGTTTAGTGCATTTTCTATGCCATGAATTC  1173
      |||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACATGTTTAGTGCATTTTCTATGCCATGAATTC  1184


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