BAC Information

Click to search

BAC

Clone NameB6Ng01-313F22
Chromosome8 (Build37)
Map Location 93,824,040 - 93,928,982
singlet/doubletdoublet
Overlap geneRpgrip1l, AJ237917
Upstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222
Downstream geneLOC100041254, LOC674324, LOC100040628, Irx3, 4933436C20Rik, Irx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313F22.bB6Ng01-313F22.g
ACCGA104602GA104603
length1,1381,148
definitionB6Ng01-313F22.b B6Ng01-313F22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,927,835 - 93,928,982)(93,824,040 - 93,825,202)
sequence
gaattcagttctggtggcactggagggcaccgacctagataagacagaaa
gctacagatgggaaataagcatggcctttaagtatactggcaatgggggg
tgggagagatggctcagaggttaagaacaccgactgctcttctagaggtc
ctgggttcaattcccagcaaccacatagtggctcacaaccatctgtaatg
gggatctgatgccctcttctggtgtgtctgaagacagtgacagtattctc
acatatatgaaatttaaaaaaaaaaaaaaaagtatactggccatggcagg
aatctgagacattctggagaagtaaaattgccagaacctgatgtcagaag
caatgaggagcagttgcagacagtaagattcctaacctgaagaacaggat
caggggaccccactaggcacaaaacatgagccagtgctgaagagcatggg
tccctaataaaatggaagtcgtggcctgtgacgggcatgcgctaagcctt
cttgtctcctcttcccattcctgggcaagttcctcctaactgggtcaaca
tctgacctctgaaccctttggccttccttagacccagggcttcccacctg
acctagtcacatggcttgtgaaggtcctcccacacgaccttcccacgagg
aaggtcaaagaaagcagggacctttgatcaccctacacaactttatcttt
aactcccacagcactgcagggcctcagtggggaggctacagagcacacga
ctacctaatatggatcgtattgagttgggtgctagtgggaaaatttcagg
tagaacctagcacatagtcaggactgagggcttgtgggcatcacagataa
gcaaacatgggaagagttagtgggcactggaaaaagggcaagctgtctca
gaagggctaacagatgcaggaaaagatggaagcagcagagattaaccagg
gcgctccacagagccagggatgaggcctggtccttagactcctgcttcta
aagctcaaaaggctgtaaccctctctgtgcccagtgtcctcggctccaag
tgagctgcacggcgctgccacggggggactgctgcattaatgagctaatg
caatgcaatgcatgcctgaactcagctctggtctgctg

gaattcaagtctcaaaaaagcacaggaaagccagagctgaagtccatgta
tcaaatactcccaaacattccagccattcctcttaatgctctgtcctccc
caaaaggggcgaaccagaatctaaaatattatctgtagcttcttgggaat
aaaattttgtctctaagatgggtagtggtggcacattcctttaatctcag
cacttgagaggcagaggcaagcagatctctttgagtataaggctagactg
gtctacagagtgagttccgagacagccagggctacatagtaagaacctgt
cttaaaaaaaaattaagaaagaaaagaaaactaaaactgttgcctctaaa
gctctaaagctgggactgcagctctaagtgatgggaatttaggttattcc
tttggtggtaaaatgaacagaaatcctgctatcagcaggataacctagcc
agtccttgtattttactgagaacaagtcatataatggctgctattactcc
atagaactagccgtattttagtaaagcaaattatttatacatactccgat
tttgtttacaataaaggagaaggaaggttcaaataagacataatcaatat
acaaagttctaaaatgaccatgaaaaagaatacatacaaatttcttattt
ctcctctggcttcttcaagtaaactattgctgtattttgtgagcgtgggt
tgtacagtttctgcttcatccacattttgaaatcttagacctaaaaataa
agtagtaaagtattatggaaagaaagttagaaaagacagatccttgattt
tctgtaagtatatttataataaatactacatgtgttcttacaaagagcag
cagaattgcaggctaaggggacatgagccctcagctaccagcaagtagta
ctggaaacagcaaaagcactgtccactgaacaactctgctaaagaaacca
tctagaaataagtcgatacattttgggacttaaacttctatctcaacttc
tgaaaaactaccattttatttagggattcataataaaaacaggacatatg
agaaatattcactaagggtaaacaacactactaaagaatgtagcatgatt
actatgatttcctactaggctcaaagtagatatatatggcctcagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_93927835_93928982
seq2: B6Ng01-313F22.b_48_1185 (reverse)

seq1  CAGCAGGACCAGAGCTGAGTCAGGGCATTGCATTGCATTGCATTAGCTCA  50
      ||||| ||||||||||||||   |||| ||||||||||||||||||||||
seq2  CAGCA-GACCAGAGCTGAGTTCAGGCA-TGCATTGCATTGCATTAGCTCA  48

seq1  TTTAAATGCCACCAAGTCCCCCGTGGCAGCGGCCGTGCAGCTCACTTTGG  100
      ||  |||| || ||   ||||||||||||| |||||||||||||| ||||
seq2  TT--AATG-CAGCAGTCCCCCCGTGGCAGC-GCCGTGCAGCTCAC-TTGG  93

seq1  AGCCGAGGACACTGGGGCACAGAGAGGGTTACAGCCTTTTTGAGCTTTAG  150
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  AGCCGAGGACACT-GGGCACAGAGAGGGTTACAGCC-TTTTGAGCTTTAG  141

seq1  AAGCAGGAAGTCTAAGGACCAGGCCTCATCCCTGGCTCTGTGGAGCGCCC  200
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGG-AGTCTAAGGACCAGGCCTCATCCCTGGCTCTGTGGAGCGCCC  190

seq1  TGGTTAATCTCTGCTGCTTCCATCTTTTCCTGCATCTGTTAGCCCTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAATCTCTGCTGCTTCCATCTTTTCCTGCATCTGTTAGCCCTTCTG  240

seq1  AGACAGCTTGCCCTTTTTCCAGTGCCCACTAACTCTTCCCATGTTTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTTGCCCTTTTTCCAGTGCCCACTAACTCTTCCCATGTTTGCTT  290

seq1  ATCTGTGATGCCCACAAGCCCTCAGTCCTGACTATGTGCTAGGTTCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGATGCCCACAAGCCCTCAGTCCTGACTATGTGCTAGGTTCTACC  340

seq1  TGAAATTTTCCCACTAGCACCCAACTCAATACGATCCATATTAGGTAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTTCCCACTAGCACCCAACTCAATACGATCCATATTAGGTAGTC  390

seq1  GTGTGCTCTGTAGCCTCCCCACTGAGGCCCTGCAGTGCTGTGGGAGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTCTGTAGCCTCCCCACTGAGGCCCTGCAGTGCTGTGGGAGTTAA  440

seq1  AGATAAAGTTGTGTAGGGTGATCAAAGGTCCCTGCTTTCTTTGACCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGTTGTGTAGGGTGATCAAAGGTCCCTGCTTTCTTTGACCTTCC  490

seq1  TCGTGGGAAGGTCGTGTGGGAGGACCTTCACAAGCCATGTGACTAGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGGAAGGTCGTGTGGGAGGACCTTCACAAGCCATGTGACTAGGTCA  540

seq1  GGTGGGAAGCCCTGGGTCTAAGGAAGGCCAAAGGGTTCAGAGGTCAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAAGCCCTGGGTCTAAGGAAGGCCAAAGGGTTCAGAGGTCAGATG  590

seq1  TTGACCCAGTTAGGAGGAACTTGCCCAGGAATGGGAAGAGGAGACAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCAGTTAGGAGGAACTTGCCCAGGAATGGGAAGAGGAGACAAGAA  640

seq1  GGCTTAGCGCATGCCCGTCACAGGCCACGACTTCCATTTTATTAGGGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGCGCATGCCCGTCACAGGCCACGACTTCCATTTTATTAGGGACC  690

seq1  CATGCTCTTCAGCACTGGCTCATGTTTTGTGCCTAGTGGGGTCCCCTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCTTCAGCACTGGCTCATGTTTTGTGCCTAGTGGGGTCCCCTGAT  740

seq1  CCTGTTCTTCAGGTTAGGAATCTTACTGTCTGCAACTGCTCCTCATTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTTCAGGTTAGGAATCTTACTGTCTGCAACTGCTCCTCATTGCT  790

seq1  TCTGACATCAGGTTCTGGCAATTTTACTTCTCCAGAATGTCTCAGATTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACATCAGGTTCTGGCAATTTTACTTCTCCAGAATGTCTCAGATTCC  840

seq1  TGCCATGGCCAGTATACTTTTTTTTTTTTTTTTAAATTTCATATATGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGGCCAGTATACTTTTTTTTTTTTTTTTAAATTTCATATATGTGA  890

seq1  GAATACTGTCACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTGTCACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCCA  940

seq1  TTACAGATGGTTGTGAGCCACTATGTGGTTGCTGGGAATTGAACCCAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATGGTTGTGAGCCACTATGTGGTTGCTGGGAATTGAACCCAGGA  990

seq1  CCTCTAGAAGAGCAGTCGGTGTTCTTAACCTCTGAGCCATCTCTCCCACC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGAAGAGCAGTCGGTGTTCTTAACCTCTGAGCCATCTCTCCCACC  1040

seq1  CCCCATTGCCAGTATACTTAAAGGCCATGCTTATTTCCCATCTGTAGCTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTGCCAGTATACTTAAAGGCCATGCTTATTTCCCATCTGTAGCTT  1090

seq1  TCTGTCTTATCTAGGTCGGTGCCCTCCAGTGCCACCAGAACTGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTATCTAGGTCGGTGCCCTCCAGTGCCACCAGAACTGAATTC  1138


seq1: chr8_93824040_93825202
seq2: B6Ng01-313F22.g_63_1210

seq1  GAATTCAAGTCTCAAAAAAGCACAGGAAAGCCAGAGCTGAAGTCCATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCTCAAAAAAGCACAGGAAAGCCAGAGCTGAAGTCCATGTA  50

seq1  TCAAATACTCCCAAACATTCCAGCCATTCCTCTTAATGCTCTGTCCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATACTCCCAAACATTCCAGCCATTCCTCTTAATGCTCTGTCCTCCC  100

seq1  CAAAAGGGGCGAACCAGAATCTAAAATATTATCTGTAGCTTCTTGGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGGGCGAACCAGAATCTAAAATATTATCTGTAGCTTCTTGGGAAT  150

seq1  AAAATTTTGTCTCTAAGATGGGTAGTGGTGGCACATTCCTTTAATCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTGTCTCTAAGATGGGTAGTGGTGGCACATTCCTTTAATCTCAG  200

seq1  CACTTGAGAGGCAGAGGCAAGCAGATCTCTTTGAGTATAAGGCTAGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAGAGGCAGAGGCAAGCAGATCTCTTTGAGTATAAGGCTAGACTG  250

seq1  GTCTACAGAGTGAGTTCCGAGACAGCCAGGGCTACATAGTAAGAACCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGAGTGAGTTCCGAGACAGCCAGGGCTACATAGTAAGAACCTGT  300

seq1  CTTAAAAAAAAATTAAGAAAGAAAAGAAAACTAAAACTGTTGCCTCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAAAAATTAAGAAAGAAAAGAAAACTAAAACTGTTGCCTCTAAA  350

seq1  GCTCTAAAGCTGGGACTGCAGCTCTAAGTGATGGGAATTTAGGTTATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAAGCTGGGACTGCAGCTCTAAGTGATGGGAATTTAGGTTATTCC  400

seq1  TTTGGTGGTAAAATGAACAGAAATCCTGCTATCAGCAGGATAACCTAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGGTAAAATGAACAGAAATCCTGCTATCAGCAGGATAACCTAGCC  450

seq1  AGTCCTTGTATTTTACTGAGAACAAGTCATATAATGGCTGCTATTACTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTGTATTTTACTGAGAACAAGTCATATAATGGCTGCTATTACTCC  500

seq1  ATAGAACTAGCCGTATTTTAGTAAAGCAAATTATTTATACATACTCCGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACTAGCCGTATTTTAGTAAAGCAAATTATTTATACATACTCCGAT  550

seq1  TTTGTTTACAATAAAGGAGAAGGAAGGTTCAAATAAGACATAATCAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTACAATAAAGGAGAAGGAAGGTTCAAATAAGACATAATCAATAT  600

seq1  ACAAAGTTCTAAAATGACCATGAAAAAGAATACATACAAATTTCTTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTCTAAAATGACCATGAAAAAGAATACATACAAATTTCTTATTT  650

seq1  CTCCTCTGGCTTCTTCAAGTAAACTATTGCTGTATTTTGTGAGCGTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGGCTTCTTCAAGTAAACTATTGCTGTATTTTGTGAGCGTGGGT  700

seq1  TGTACAGTTTCTGCTTCATCCACATTTTGAAATCTTAGACCTAAAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGTTTCTGCTTCATCCACATTTTGAAATCTTAGACCTAAAAATAA  750

seq1  AGTAGTAAAGTATTATGGAAAGAAAGTTAGAAAAGACAGATCCTTGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAAAGTATTATGGAAAGAAAGTTAGAAAAGACAGATCCTTGATTT  800

seq1  TCTGTAAGTATATTTATAATAAATACTACATGTGTTCTTACAAAGAGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGTATATTTATAATAAATACTACATGTGTTCTTACAAAGAGCAG  850

seq1  CAGAATTGCAGGCTAAGGGGACATGAGCCCTCAGCTACCAGCAAGTAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTGCAGGCTAAGGGGACATGAGCCCTCAGCTACCAGCAAGTAGTA  900

seq1  CTGGAAACAGCAAAAGCACTGTCCACTGAACAACTCTGCTAAAGAAACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAACAGCAAAAGCACTGTCCACTGAACAACTCTGCTAAAGAAACCA  950

seq1  TCTAGAAATAAGTCGATACATTTTGGGACTTAAAACTTCTATCTCAACTT  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTAGAAATAAGTCGATACATTTTGGGACTT-AAACTTCTATCTCAACTT  999

seq1  CTGAAAAACTACCATTTTTAATTTAGGGATTCATAATAAAAAACAAGGAC  1050
      ||||||||||||||||||  ||||||||||||||||||||||   |||||
seq2  CTGAAAAACTACCATTTT--ATTTAGGGATTCATAATAAAAA--CAGGAC  1045

seq1  ATATGAAGGAAATAATTCAACCTAGGGTAAAAACAAACACTACTAAAAGA  1100
      ||||||  ||||| |||| ||  ||||||||    ||||||||| |||||
seq2  ATATGA--GAAAT-ATTC-ACTAAGGGTAAA---CAACACTACT-AAAGA  1087

seq1  ATGTAGCAATGATATAACTATTGATTTTCTACTAGGCTCATAGGTAG-TA  1149
      ||||||| |||  || |||| |||||| |||||||||||| | |||| ||
seq2  ATGTAGC-ATG--ATTACTA-TGATTTCCTACTAGGCTCA-AAGTAGATA  1132

seq1  TATATG--CTCAGCCA  1163
      ||||||  ||||||||
seq2  TATATGGCCTCAGCCA  1148


| Home | SequenceCutter | Blast | Download |