BAC Information

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BAC

Clone NameB6Ng01-317C12
Chromosome8 (Build37)
Map Location 58,569,828 - 58,571,021
singlet/doubletsinglet
Overlap geneGlra3
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916, Adam29, LOC664812
Downstream geneHpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317C12.bB6Ng01-317C12.g
ACCGA107372GA107373
length1,1831,197
definitionB6Ng01-317C12.b B6Ng01-317C12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaggcgccaactcagaacatccattataaataatagtcattaa
caaaatagaacagactattcaaaagaacagaatatcttggaaattagaat
tctgatgagagtaggggcttgtttatttgtttgcttgtttgtttgtttgt
ttgtttgaggcccagggaagcagattttgagagctcaactgtgtatttag
aaaatgtcacctaaaaatacagattcctccctgccatttgcagtttcaaa
gagctcacaaaaatcaacctttggagtgtgacattggccatcaatctata
accactgttacattctaggaagtagaatacaaattcagttcagaaattat
aacaacactgggttattaaatgccagaaaaataataaatcattaattaac
aataactgtttagtgttttacatcagctgtatgctagtatatctccagca
gaataaaagatttttggaaattactaaagactcaaaagaaaaaaaaatct
tagaatatatttaggtcattccttaagattattttctttttataagaata
tttgtaagaaatatctattatctgaagaaaatatctaaagtttccaacaa
taacctagtattttttaaatgaacttcaatataataaagtattattggct
tctcaagattctcttatatcatcagttgttttagcttgttcaaagtcgtg
ctaagtcaagcatatcatatcgcaaagccagaagacacatgtggtccatt
ctgaactaatttcatttcgacaatacctacatcaactggtcagaagaggt
ggtgtgtgcaatctattgacagcaaagcttcaagacagtttatgttgata
agtgtttctccacactggaatttattgtaaatgagaagaacaaaagtagt
aatgattatggggtcaagttgtagacagcataaaagttctctttaataat
tagaacttagtaggacacctgaagaaatatttaagatgcgtgatcattat
gatgctatacatggggtgagaagcaggacaagaactctgacgggtagcag
agagtaaagtagtagtattgtttgagaaatttagagtgaaaaggttgtgg
tgtttatgatggcacatgtagcaataagaaagcagaaggtcaagtgtatc
aggtgttgccaggaagttcattttcaaccacag
gaattctcacctgaggaatacagaatggcagagaagcaagtgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggggaggatgtggagaaagaagaacactcctccattgttggcg
ggattgcaagctcgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccagaggatcccgcaatacctctcctgggc
atatatccagaagaggtcccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatgcagaaaatgtggtacatttacacaatg
gggtagtactcagctattaaaaagaatgaattatgaaattcctaggcaaa
tggatggacctggagggcgtcatcctgagtgaggtaacacattcacaaag
gaactcacacaatatgtactcactgataagtggatattagccccaaacct
aggatacccaagatataagatacaatttgctaaacgcatgaaactcaaga
agaaagaagaccaaagtgtggacactttgccccttcttagaattgggaac
aaaacacccttggaaggagttacagagacaaagtttggagctgagatgaa
aggatggaccatctagagactgccatatccagggatccatcccataatca
gcatccaaacgctgacaccattgcatatactagcaagattttatcaaaag
gacccagatgtagctgtcacttgtgagactatgccggggcctagcaaaca
cagaagtggatgctcacagtcagctaatggatggatcacaggctcccaat
agaggagctagagaaagtacccaaggagctaaagggatctgcaaccctat
aggtgacacattatgactaccagtaccccggagctcttgactctagctgc
atatgttatcaaagatggctagtgcatcactgaagagaagacccaattgg
aaccgcaaccttcatatgctcagtacaggaatgcaggccaacgggcaatg
tgtgtgttataggggattgcagcgaataaacataataggctaaccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_58569828_58571021
seq2: B6Ng01-317C12.b_45_1227

seq1  GAATTCAGAGGCGCCAACTCAGAACATCCATTATAAATAATAGTCATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGCGCCAACTCAGAACATCCATTATAAATAATAGTCATTAA  50

seq1  CAAAATAGAACAGACTATTCAAAAGAACAGAATATCTTGGAAATTAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGAACAGACTATTCAAAAGAACAGAATATCTTGGAAATTAGAAT  100

seq1  TCTGATGAGAGTAGGGGCTTGTTTATTTGTTTGCTTGTTTGTTTGTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGAGAGTAGGGGCTTGTTTATTTGTTTGCTTGTTTGTTTGTTTGT  150

seq1  TTGTTTGAGGCCCAGGGAAGCAGATTTTGAGAGCTCAACTGTGTATTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGAGGCCCAGGGAAGCAGATTTTGAGAGCTCAACTGTGTATTTAG  200

seq1  AAAATGTCACCTAAAAATACAGATTCCTCCCTGCCATTTGCAGTTTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCACCTAAAAATACAGATTCCTCCCTGCCATTTGCAGTTTCAAA  250

seq1  GAGCTCACAAAAATCAACCTTTGGAGTGTGACATTGGCCATCAATCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCACAAAAATCAACCTTTGGAGTGTGACATTGGCCATCAATCTATA  300

seq1  ACCACTGTTACATTCTAGGAAGTAGAATACAAATTCAGTTCAGAAATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTTACATTCTAGGAAGTAGAATACAAATTCAGTTCAGAAATTAT  350

seq1  AACAACACTGGGTTATTAAATGCCAGAAAAATAATAAATCATTAATTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACACTGGGTTATTAAATGCCAGAAAAATAATAAATCATTAATTAAC  400

seq1  AATAACTGTTTAGTGTTTTACATCAGCTGTATGCTAGTATATCTCCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGTTTAGTGTTTTACATCAGCTGTATGCTAGTATATCTCCAGCA  450

seq1  GAATAAAAGATTTTTGGAAATTACTAAAGACTCAAAAGAAAAAAAAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAAGATTTTTGGAAATTACTAAAGACTCAAAAGAAAAAAAAATCT  500

seq1  TAGAATATATTTAGGTCATTCCTTAAGATTATTTTCTTTTTATAAGAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATATTTAGGTCATTCCTTAAGATTATTTTCTTTTTATAAGAATA  550

seq1  TTTGTAAGAAATATCTATTATCTGAAGAAAATATCTAAAGTTTCCAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGAAATATCTATTATCTGAAGAAAATATCTAAAGTTTCCAACAA  600

seq1  TAACCTAGTATTTTTTAAATGAACTTCAATATAATAAAGTATTATTGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTAGTATTTTTTAAATGAACTTCAATATAATAAAGTATTATTGGCT  650

seq1  TCTCAAGATTCTCTTATATCATCAGTTGTTTTAGCTTGTTCAAAGTCGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGATTCTCTTATATCATCAGTTGTTTTAGCTTGTTCAAAGTCGTG  700

seq1  CTAAGTCAAGCATATCATATCGCAAAGCCAGAAGACACATGTGGTCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCAAGCATATCATATCGCAAAGCCAGAAGACACATGTGGTCCATT  750

seq1  CTGAACTAATTTCATTTCGACAATACCTACATCAACTGGTCAGAAGAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTAATTTCATTTCGACAATACCTACATCAACTGGTCAGAAGAGGT  800

seq1  GGTGTGTGCAATCTATTGACAGCAAAGCTTCAAGACAGTTTATGTTGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGCAATCTATTGACAGCAAAGCTTCAAGACAGTTTATGTTGATA  850

seq1  AGTGTTTCTCCACACTGGAATTTATTGTAAATGAGAAGAACAAAAGTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCTCCACACTGGAATTTATTGTAAATGAGAAGAACAAAAGTAGT  900

seq1  AATGATTATGGGGTCAAGTTGTAGACAGCATAAAAGTTCTCTTTAATAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTATGGGGTCAAGTTGTAGACAGCATAAAAGTTCTCTTTAATAAT  950

seq1  TAGAACTTAGTAGGACAACCTGAAGAAATATTTAAGATGCGTGATCATTA  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAGAACTTAGTAGGAC-ACCTGAAGAAATATTTAAGATGCGTGATCATTA  999

seq1  TGATGCTATACAT-GGGTGAGAAAGCAGGGACAAGAACTCTGACGGGTAG  1049
      ||||||||||||| ||||||| ||||| ||||||||||||||||||||||
seq2  TGATGCTATACATGGGGTGAG-AAGCA-GGACAAGAACTCTGACGGGTAG  1047

seq1  CAAGAGAGGTAAAGGTAGTAAGTA-TGTTTGAGAATTTTAGAAGTGAAAA  1098
      | ||||| ||||| ||||| |||| |||||||||| ||||| ||||||||
seq2  C-AGAGA-GTAAA-GTAGT-AGTATTGTTTGAGAAATTTAG-AGTGAAAA  1092

seq1  GG-TGT-GTGTTTATGAATGGCACATTGTAGCATTAAGGAAAGGCAGAA-  1145
      || ||| ||||||||| |||||||| ||||||| ||||  || |||||| 
seq2  GGTTGTGGTGTTTATG-ATGGCACA-TGTAGCAATAAG--AAAGCAGAAG  1138

seq1  GTCAAGGGTGGTATCCAGGTGTGTGCCAGGAAAGTCATTTCCAA-CACAG  1194
      ||||||    |||| ||||||| |||||||||  |||||| ||| |||||
seq2  GTCAAG---TGTAT-CAGGTGT-TGCCAGGAAGTTCATTTTCAACCACAG  1183