BAC Information

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BAC

Clone NameB6Ng01-321B15
Chromosome8 (Build37)1 (Build37)
Map Location 86,510,195 - 86,510,82538,084,756 - 38,084,936
singlet/doubletsingletsinglet
Overlap genePrkaca
Upstream geneRnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b
Downstream geneSamd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321B15.bB6Ng01-321B15.g
ACCGA110300GA110301
length632956
definitionB6Ng01-321B15.b B6Ng01-321B15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,510,195 - 86,510,825)(38,084,756 - 38,084,936)
sequence
gaattcaagtttgaccaggaacgggaagttgacggcctgcaggatgcgct
tctcattcagagtgtgctcgatctgctttagcttcaccacctgtgggaga
ggagaggagggagggagagaggtcagagccagggatgtgagactggggat
ttcctcagtcagaagggtgcagataagcacagtgtggctgagggctgaca
gtcgagggtccacacagatcagagcagaccatgtaggcacagaagcccct
tagaccagagggtcagcacgtaggggaggagcctgggagctacagatgcc
cagatgaggcacctggcaaaatctggcaagtagagaaggctgcctgcaag
agaaggagactcatctgacacgagagaggcccccaaaggtatggagactt
agaaatcagcttccctttttctaggcaagtcttttgtcttgtgtggcact
gagcatgaaacccaggacctttcatgtgctagaccagctctcgatcacag
agtggcattcccggtcctttcaacccttgtatttatttctatttgtcggg
ggcagcttgtgcacgaggaggcacacgcgtgctgaggaagtctgtctccc
ttctcaccaagcgaatcctggaggtcaaagtc
gaattcagggcagccgggcatggtggcgcactcctttaatcccagcactt
gggaggcagaggcaggcagatttctgagttcaagccagcctggtctacag
agtgagttctaggacagcagggctacacagagaaaccctgtctcaaaaca
aaacaaaacagaattcagggcctctggaacaacatctagagctcttaact
actgagccatctctctaccagacatggctattctaatagttgataaaata
taccaaacaaaagataattagaaggaacaaggaaggtcacatcatactct
tcaaggaagcagggcaccaagaggaggcagaatttcatctatagccatac
tcaacacagatggactcaatgttgaaaaacaaacgtggctagatgtagac
cacagactaccccccaacacagtgacagtgggtggcttcaacatgccgct
ttcaccgacacacagctcacaaaactggacaaaaacgaaggaaacactgg
aggtaaatgatgtcatctatcaaatggacctatagaacattccaccagaa
aatacagcttctttgggcgagggagagatggctgagtagccaagatgagg
gctaaggggaggtggctcttgcagaggatctggttccattgctcagctcc
cacctggtggctctcctatgtccctacatccggttcatgggatctgaccc
tcactctgtcctccctgctcgcaggcaaacaagcctagatatgagacaga
tgtgaatgcacactcttctcagcagcctgtggaactttcccctaaactga
tcacatataataagcacacacagcacgtctcaaaaactataagaaaactg
aaatgacatcctgtaatctttctgatcacgtggagcacagttagataaca
acagtaagagaaactatggaaaacccacaagacattgcaacagaaaagca
cagcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_86510195_86510825
seq2: B6Ng01-321B15.b_46_677 (reverse)

seq1  GACTTTGACCTCCAGGATTCGCTTGGTGA-AAGGGAGACAGACTTCCTCA  49
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GACTTTGACCTCCAGGATTCGCTTGGTGAGAAGGGAGACAGACTTCCTCA  50

seq1  GCACGCGTGTGCCTCCTCGTGCCCAAGCTGCCCCCGACAAATAGAAATAA  99
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCACGCGTGTGCCTCCTCGTGCACAAGCTGCCCCCGACAAATAGAAATAA  100

seq1  ATACAAGGGTTGAAAGGACCGGGAATGCCACTCTGTGATCGAGAGCTGGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGGGTTGAAAGGACCGGGAATGCCACTCTGTGATCGAGAGCTGGT  150

seq1  CTAGCACATGAAAGGTCCTGGGTTTCATGCTCAGTGCCACACAAGACAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACATGAAAGGTCCTGGGTTTCATGCTCAGTGCCACACAAGACAAA  200

seq1  AGACTTGCCTAGAAAAAGGGAAGCTGATTTCTAAGTCTCCATACCTTTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGCCTAGAAAAAGGGAAGCTGATTTCTAAGTCTCCATACCTTTGG  250

seq1  GGGCCTCTCTCGTGTCAGATGAGTCTCCTTCTCTTGCAGGCAGCCTTCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCTCTCGTGTCAGATGAGTCTCCTTCTCTTGCAGGCAGCCTTCTC  300

seq1  TACTTGCCAGATTTTGCCAGGTGCCTCATCTGGGCATCTGTAGCTCCCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCCAGATTTTGCCAGGTGCCTCATCTGGGCATCTGTAGCTCCCAG  350

seq1  GCTCCTCCCCTACGTGCTGACCCTCTGGTCTAAGGGGCTTCTGTGCCTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCCCCTACGTGCTGACCCTCTGGTCTAAGGGGCTTCTGTGCCTAC  400

seq1  ATGGTCTGCTCTGATCTGTGTGGACCCTCGACTGTCAGCCCTCAGCCACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTGCTCTGATCTGTGTGGACCCTCGACTGTCAGCCCTCAGCCACA  450

seq1  CTGTGCTTATCTGCACCCTTCTGACTGAGGAAATCCCCAGTCTCACATCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTATCTGCACCCTTCTGACTGAGGAAATCCCCAGTCTCACATCC  500

seq1  CTGGCTCTGACCTCTCTCCCTCCCTCCTCTCCTCTCCCACAGGTGGTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTGACCTCTCTCCCTCCCTCCTCTCCTCTCCCACAGGTGGTGAA  550

seq1  GCTAAAGCAGATCGAGCACACTCTGAATGAGAAGCGCATCCTGCAGGCCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGCAGATCGAGCACACTCTGAATGAGAAGCGCATCCTGCAGGCCG  600

seq1  TCAACTTCCCGTTCCTGGTCAAACTTGAATTC  631
      ||||||||||||||||||||||||||||||||
seq2  TCAACTTCCCGTTCCTGGTCAAACTTGAATTC  632

seq1: chr1_38084756_38084936
seq2: B6Ng01-321B15.g_66_232 (reverse)

seq1  TGAATTCTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCT  50
      |||||||| |||| |||| ||||           ||||||||||||||||
seq2  TGAATTCTGTTTTGTTTTGTTTT-----------GAGACAGGGTTTCTCT  39

seq1  GTGTAGCCATGACTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCG  100
      |||||||| || ||||||| ||||||||| ||||||||||||||| || |
seq2  GTGTAGCCCTG-CTGTCCTAGAACTCACTCTGTAGACCAGGCTGG-CTTG  87

seq1  AACTCAGAAATCCACCTGCCTCTGTCTCCCGAGTGCTGGGACTAAAGGCG  150
      ||||||||||||  |||||||||| ||||| |||||||||| |||||| |
seq2  AACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGAG  137

seq1  TGCGCCACCACGCCCGGCTCTTTGTGAATTC  181
      |||||||||| ||||||||     |||||||
seq2  TGCGCCACCATGCCCGGCT-GCCCTGAATTC  167