BAC Information

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BAC

Clone NameB6Ng01-321E20
Chromosome8 (Build37)
Map Location 55,295,621 - 55,436,072
singlet/doubletdoublet
Overlap genenone
Upstream geneAga, Neil3, LOC100040107, Vegfc
Downstream geneSpcs3, Asb5, Spata4, Wdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321E20.bB6Ng01-321E20.g
ACCGA110448GA110449
length9801,129
definitionB6Ng01-321E20.b B6Ng01-321E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,295,621 - 55,296,411)(55,434,938 - 55,436,072)
sequence
gaattccaggacagccagggctacacagagaaacctgtctcaaacaacaa
ccccccccccaaaaaaaaaaatcaatgaaacctcaccaatgagtagatca
agtaaagatagtataactgggcttgaaggtctaccatttagactatgaca
aagataaaatagtaaggtatggatagaatatacacaatctatagagcagt
ataaaagatgaaatttatgaattatataaaaggcaaagaaaggaatcatg
aacatatctgctcatatataaaggcaacaccacttaaatttgaagaaata
agaagcttacatgataaacagaaactaaataaatctctatctaataaatc
agcactactgaagatgcctgaacagttaaattatacatacccaaaagaaa
cctcaacatatccatgaagccacaggaaagattaaaccatactagatcag
aaccctaagccaatgaagaacatgggcacatcaaacacaaataaaagaag
agatgacaggaatgaaagcagacagtagataagaacatataacattagca
gtctgttttccaaccaaaagacatgggctagcaaagggaatttaaaattc
aattccatttgttgacataaaaaagacattccactaacaaagataaacac
agccttggggagaaagggtgaaggagattgggagcaaacaaccagaaaac
aagcaggtatataactgaccaatccctgatgaaataaaaggcaaattata
aaattagggcagataaagaaggtagcttcttattgactaatagaataatt
tgcaaagcagaaatcatgcttctaagctcatatctattttacactggtac
cccgaatttcataaaccaaagactacaggatataaagatatagtgtgtgc
tgtcatcaacacaacgataataaataaattcaatagcctgctgtcactgg
gaaatagataaccaagattaaaaattgaga

gaattcttctcttagagaagacttcttagacaagtaccaagaagaaaact
ttgcccattaacactacagtaatcagacaaccttaaaacccatgcagaat
tcctctgcatagtttccattcaagcccggggagaagcctcataaagctac
agtcttttatctggtcctgaatagaaagaaaattttggaacatgtgaaac
tgtttctgaagcctgctgctaacaaattaaagacagaatgtgagttgtcc
tccaaagcacataggaaactccaagtctgcaaacttacagagaaactctt
gttcttcctaaaatttaattctcacctccgctgccatggacttcttagac
ctgtgagaccatctgcatctgttgtgactttcctctccacatgcctgccc
tatgtgaggatatttttcaggttaaggggtaacaaagtagctgttcccta
ctatctggagggtttttatatttcaagattctttgtccaggctcttctgc
acttagcctactccactgaagcatacctatctatacagaaatacaccatc
atttgtaccatagatgcagataaaaacaccaagacccccatatcataaag
gtacagtcttctgtcacaatggttaggtgccaattgggtgtaatccagta
actcaaagaaacaaaaatatgagcaagttccagctacaagtttgtacatt
gctacaactacaacgttgcatcgcatttctcaatgttggtggcaaatatc
ttcttcaaagctgtactctaaactgtgtatcttctcaggatgatgagatg
cctgctgtgatgcctaatctggatggtctgagtgatttgattgagaaatt
accataagatggcaacacacaatgcgtgagttggggagtatttaggtgca
attagatgttgaaggctgggatctcattaacaatttaaggcactgatgga
ttccaaattggagcagaatactgagagcactaggactgaaagatggttga
agggagcataccatttattcatagtgtgttttttaaggagtttacttgtc
cattcttctgtatttttttttttttttaatgctttctagtgctattagga
gaaattcattacacaataagtcagctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55295621_55296411
seq2: B6Ng01-321E20.b_45_835

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCTGTCTCAAACAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCTGTCTCAAACAACAA  50

seq1  CCCCCCCCCCAAAAAAAAAAATCAATGAAACCTCACCAATGAGTAGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCAAAAAAAAAAATCAATGAAACCTCACCAATGAGTAGATCA  100

seq1  AGTAAAGATAGTATAACTGGGCTTGAAGGTCTACCATTTAGACTATGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGATAGTATAACTGGGCTTGAAGGTCTACCATTTAGACTATGACA  150

seq1  AAGATAAAATAGTAAGGTATGGATAGAATATACACAATCTATAGAGCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAATAGTAAGGTATGGATAGAATATACACAATCTATAGAGCAGT  200

seq1  ATAAAAGATGAAATTTATGAATTATATAAAAGGCAAAGAAAGGAATCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGATGAAATTTATGAATTATATAAAAGGCAAAGAAAGGAATCATG  250

seq1  AACATATCTGCTCATATATAAAGGCAACACCACTTAAATTTGAAGAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATCTGCTCATATATAAAGGCAACACCACTTAAATTTGAAGAAATA  300

seq1  AGAAGCTTACATGATAAACAGAAACTAAATAAATCTCTATCTAATAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTACATGATAAACAGAAACTAAATAAATCTCTATCTAATAAATC  350

seq1  AGCACTACTGAAGATGCCTGAACAGTTAAATTATACATACCCAAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTACTGAAGATGCCTGAACAGTTAAATTATACATACCCAAAAGAAA  400

seq1  CCTCAACATATCCATGAAGCCACAGGAAAGATTAAACCATACTAGATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACATATCCATGAAGCCACAGGAAAGATTAAACCATACTAGATCAG  450

seq1  AACCCTAAGCCAATGAAGAACATGGGCACATCAAACACAAATAAAAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAAGCCAATGAAGAACATGGGCACATCAAACACAAATAAAAGAAG  500

seq1  AGATGACAGGAATGAAAGCAGACAGTAGATAAGAACATATAACATTAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACAGGAATGAAAGCAGACAGTAGATAAGAACATATAACATTAGCA  550

seq1  GTCTGTTTTCCAACCAAAAGACATGGGCTAGCAAAGGGAATTTAAAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTTCCAACCAAAAGACATGGGCTAGCAAAGGGAATTTAAAATTC  600

seq1  AATTCCATTTGTTGACATAAAAAAGACATTCCACTAACAAAGATAAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCATTTGTTGACATAAAAAAGACATTCCACTAACAAAGATAAACAC  650

seq1  AGCCTTGGGGAGAAAGGGTGAAGGAGATTGGGAGCAAACAACCAGAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGGGAGAAAGGGTGAAGGAGATTGGGAGCAAACAACCAGAAAAC  700

seq1  AAGCAGGTATATAACTGACCAATCCCTGATGAAATAAAAGGCAAATTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGTATATAACTGACCAATCCCTGATGAAATAAAAGGCAAATTATA  750

seq1  AAATTAGGGCAGATAAAGAAGGTAGCTTCTTATTGACTAAT  791
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGGGCAGATAAAGAAGGTAGCTTCTTATTGACTAAT  791


seq1: chr8_55434938_55436072
seq2: B6Ng01-321E20.g_67_1195 (reverse)

seq1  GAAAGCTGGACTATGTGTTAAATGAATTTCTCCTAATAGCAACTAGAAAG  50
      ||||||| ||||   |||  |||||||||||||||||||| |||||||||
seq2  GAAAGCT-GACTTATTGTGTAATGAATTTCTCCTAATAGC-ACTAGAAAG  48

seq1  CATTAAAAAAAAAAAAATACAAGGAAAGAATGGGACAAGGTAAACT-CTT  99
      ||||||||||||||||| | |  | |||||| |||||| ||||||| |||
seq2  CATTAAAAAAAAAAAAAAATACAG-AAGAAT-GGACAA-GTAAACTCCTT  95

seq1  AAAAAACACACTATGAATAAATGGTATGCTCCCTTCAACCATCTTTCAGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAAAACACACTATGAATAAATGGTATGCTCCCTTCAACCATCTTTCAG-  144

seq1  TCCTAGTGCTTCTCAGTATTCTGCTCCAATTTGGAATCCATCAGTGCCTT  199
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTGC-TCTCAGTATTCTGCTCCAATTTGGAATCCATCAGTGCCTT  193

seq1  AAATTGTTAATGAGATCCCAGCCTTCAACATCTAATTGCACCTAAATACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTAATGAGATCCCAGCCTTCAACATCTAATTGCACCTAAATACT  243

seq1  CCCCAACTCACGCATTGTGTGTTGCCATCTTATGGTAATTTCTCAATCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTCACGCATTGTGTGTTGCCATCTTATGGTAATTTCTCAATCAA  293

seq1  ATCACTCAGACCATCCAGATTAGGCATCACAGCAGGCATCTCATCATCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCAGACCATCCAGATTAGGCATCACAGCAGGCATCTCATCATCCT  343

seq1  GAGAAGATACACAGTTTAGAGTACAGCTTTGAAGAAGATATTTGCCACCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGATACACAGTTTAGAGTACAGCTTTGAAGAAGATATTTGCCACCA  393

seq1  ACATTGAGAAATGCGATGCAACGTTGTAGTTGTAGCAATGTACAAACTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAGAAATGCGATGCAACGTTGTAGTTGTAGCAATGTACAAACTTG  443

seq1  TAGCTGGAACTTGCTCATATTTTTGTTTCTTTGAGTTACTGGATTACACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGAACTTGCTCATATTTTTGTTTCTTTGAGTTACTGGATTACACC  493

seq1  CAATTGGCACCTAACCATTGTGACAGAAGACTGTACCTTTATGATATGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGGCACCTAACCATTGTGACAGAAGACTGTACCTTTATGATATGGG  543

seq1  GGTCTTGGTGTTTTTATCTGCATCTATGGTACAAATGATGGTGTATTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGGTGTTTTTATCTGCATCTATGGTACAAATGATGGTGTATTTCT  593

seq1  GTATAGATAGGTATGCTTCAGTGGAGTAGGCTAAGTGCAGAAGAGCCTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGATAGGTATGCTTCAGTGGAGTAGGCTAAGTGCAGAAGAGCCTGG  643

seq1  ACAAAGAATCTTGAAATATAAAAACCCTCCAGATAGTAGGGAACAGCTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAATCTTGAAATATAAAAACCCTCCAGATAGTAGGGAACAGCTAC  693

seq1  TTTGTTACCCCTTAACCTGAAAAATATCCTCACATAGGGCAGGCATGTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTACCCCTTAACCTGAAAAATATCCTCACATAGGGCAGGCATGTGG  743

seq1  AGAGGAAAGTCACAACAGATGCAGATGGTCTCACAGGTCTAAGAAGTCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAGTCACAACAGATGCAGATGGTCTCACAGGTCTAAGAAGTCCA  793

seq1  TGGCAGCGGAGGTGAGAATTAAATTTTAGGAAGAACAAGAGTTTCTCTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCGGAGGTGAGAATTAAATTTTAGGAAGAACAAGAGTTTCTCTGT  843

seq1  AAGTTTGCAGACTTGGAGTTTCCTATGTGCTTTGGAGGACAACTCACATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGCAGACTTGGAGTTTCCTATGTGCTTTGGAGGACAACTCACATT  893

seq1  CTGTCTTTAATTTGTTAGCAGCAGGCTTCAGAAACAGTTTCACATGTTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTAATTTGTTAGCAGCAGGCTTCAGAAACAGTTTCACATGTTCC  943

seq1  AAAATTTTCTTTCTATTCAGGACCAGATAAAAGACTGTAGCTTTATGAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTCTTTCTATTCAGGACCAGATAAAAGACTGTAGCTTTATGAGG  993

seq1  CTTCTCCCCGGGCTTGAATGGAAACTATGCAGAGGAATTCTGCATGGGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCCGGGCTTGAATGGAAACTATGCAGAGGAATTCTGCATGGGTT  1043

seq1  TTAAGGTTGTCTGATTACTGTAGTGTTAATGGGCAAAGTTTTCTTCTTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTTGTCTGATTACTGTAGTGTTAATGGGCAAAGTTTTCTTCTTGG  1093

seq1  TACTTGTCTAAGAAGTCTTCTCTAAGAGAAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||
seq2  TACTTGTCTAAGAAGTCTTCTCTAAGAGAAGAATTC  1129


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