BAC Information

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BAC

Clone NameB6Ng01-321G11
Chromosome8 (Build37)
Map Location 9,427,377 - 9,596,861
singlet/doubletdoublet
Overlap geneTmem28
Upstream geneLOC100039836, Efnb2, 9430010O03Rik
Downstream geneLig4, Abhd13, Tnfsf13b, Myo16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321G11.bB6Ng01-321G11.g
ACCGA110522GA110523
length1,1571,099
definitionB6Ng01-321G11.b B6Ng01-321G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,427,377 - 9,428,517)(9,595,781 - 9,596,861)
sequence
gaattccccatctgtatctgaccgtagctttaaccatctgagcatacttg
gttttcctacgtaggaaatttaagagatcaaattaaattcatatccacac
acgtacattctgcctgcaaaaaaacagtagcaatattacataaacctgat
aagtttcagcacactgtcagcaagtagataattttaagaaccctgaagta
gccctttgatatctcatggatatcaaatcaccaacaacttttagagggat
cttccttacagccggaggagagcataaacaagctattccatttacctcat
gctcggcttggaacacagggagatggggatgtctggatccagcaccatcg
cattatcactgtggacttcctgtcagagcactcaagggactcgcctagca
taatcctcaagcagcctaggcaactgcagagaccctctgctgagccaatt
aatgcaagtgttcctctggtgagtgaagaggtgtgtgtgtgcccaggggt
ctattaatttataaatcaacaaacaatccagagtgcaactgaagcatcta
aatggacagtaatttctttctaataaaaatcgtactcatgtggcttccat
gtgaccatgggatcccactgatggccatagctgccagggaaactgaggca
ggaaagtgtgctagaaaccatctcctctgttttctacgggtatgtgtatg
ctcagctaaaaccctttaccccatgacgccctacggtttaaccaagacca
accatcaacgtcttttcacaattgcgccctttcccctgtgttttgagcca
aacattgcccctcaaaagtatgaccggaaacccatcaacaaagtcaggtt
ttgctataggtacactctcaaaccagaggactgtcctgtcagcccatcac
agcaagctgctttgcttatcaagtggaaatcccatgatagtgtttctaga
tctccttgctctggggatcaccagtcctaaggcatgggaagccaggaact
ttccctgatcaccagaagaacaagaacttggctatatccctgaaagttca
taaaaataccaccgttggcctgctcttgtgtcagctagatttgttcttgg
gctgatgccaagtaacaggtgaaaaaataagctttaacttgggcaagatc
aaccacc

gaattcctctcttcccagaattcctcccttcccagcatcctgactgcaga
tgcaatatgataactggctacttcacaaccttgcctccacaccttccctg
acagtgtggcctgtaccctttaaccttgagtcaaaatctctgaattctta
gggtgccttagttagatattttggcctggcactgagaaaagcaacttata
tggcttggcgataatggaagtggaggtcccaaagactgtttctctagtta
ggtggacctaacagttcctgtctgttgcctctgctagcttcctcctcaca
acttgtgttttcgtgccatattgtgatgtgtgtctgtgagaacgagatca
aatacaaggggcccttctgtgcgacttttgtaagtttcagggaagaggag
tcaccttgctgctttttccagaggatgccctgcccatggtgacaagtgat
caatgctgttgttatttctagcccttctgaagaccccaggaagaaagact
ggccaatcctattttctaatgactgacaaggaggatctgggagctgggag
gttaatgtggacggatgctcccattttcctttttgttaagctttgattca
ccacctgcttcctgtagtgtgcatgtgctgggggagggccaagagctccc
taaaagtggcaggcaagtttaaccttgaaactacctccaggttgttttcc
agcagagaagttgctgtaactgtgggcaccctgctgttctgaaggtcatg
cttgcagatagaaatcttcagaggcttcttgcaagtattgttgggagaag
tcaagaaaatatatttctgctcaaggcatgccccattttctatgaaaagc
gagagcctcgtggggaatctgaaaacaatgggagttaaaagaatagttga
cttatttctatgtgcttttttctggcttttacaaacagcaatagctgtat
ttattttattgttacgtactaagggtaaaagaaatggtgtcttgttgcaa
aaatatggtaggataattcttcctattatcctgatttttatccagataag
gtttgttggaattgagacctttactggcctattaaccaattagcctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_9427377_9428517
seq2: B6Ng01-321G11.b_44_1200

seq1  GAATTCCCCATCTGTATCTGACCGTAGCTTTAACCATCTGAGCATACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCATCTGTATCTGACCGTAGCTTTAACCATCTGAGCATACTTG  50

seq1  GTTTTCCTACGTAGGAAATTTAAGAGATCAAATTAAATTCATATCCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTACGTAGGAAATTTAAGAGATCAAATTAAATTCATATCCACAC  100

seq1  ACGTACATTCTGCCTGCAAAAAAACAGTAGCAATATTACATAAACCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTACATTCTGCCTGCAAAAAAACAGTAGCAATATTACATAAACCTGAT  150

seq1  AAGTTTCAGCACACTGTCAGCAAGTAGATAATTTTAAGAACCCTGAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCAGCACACTGTCAGCAAGTAGATAATTTTAAGAACCCTGAAGTA  200

seq1  GCCCTTTGATATCTCATGGATATCAAATCACCAACAACTTTTAGAGGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTGATATCTCATGGATATCAAATCACCAACAACTTTTAGAGGGAT  250

seq1  CTTCCTTACAGCCGGAGGAGAGCATAAACAAGCTATTCCATTTACCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTACAGCCGGAGGAGAGCATAAACAAGCTATTCCATTTACCTCAT  300

seq1  GCTCGGCTTGGAACACAGGGAGATGGGGATGTCTGGATCCAGCACCATCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGCTTGGAACACAGGGAGATGGGGATGTCTGGATCCAGCACCATCG  350

seq1  CATTATCACTGTGGACTTCCTGTCAGAGCACTCAAGGGACTCGCCTAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCACTGTGGACTTCCTGTCAGAGCACTCAAGGGACTCGCCTAGCA  400

seq1  TAATCCTCAAGCAGCCTAGGCAACTGCAGAGACCCTCTGCTGAGCCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTCAAGCAGCCTAGGCAACTGCAGAGACCCTCTGCTGAGCCAATT  450

seq1  AATGCAAGTGTTCCTCTGGTGAGTGAAGAGGTGTGTGTGTGCCCAGGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGTGTTCCTCTGGTGAGTGAAGAGGTGTGTGTGTGCCCAGGGGT  500

seq1  CTATTAATTTATAAATCAACAAACAATCCAGAGTGCAACTGAAGCATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAATTTATAAATCAACAAACAATCCAGAGTGCAACTGAAGCATCTA  550

seq1  AATGGACAGTAATTTCTTTCTAATAAAAATCGTACTCATGTGGCTTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACAGTAATTTCTTTCTAATAAAAATCGTACTCATGTGGCTTCCAT  600

seq1  GTGACCATGGGATCCCACTGATGGCCATAGCTGCCAGGGAAACTGAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCATGGGATCCCACTGATGGCCATAGCTGCCAGGGAAACTGAGGCA  650

seq1  GGAAAGTGTGCTAGAAACCATCTCCTCTGTTTTCTACGGGTATGTGTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTGTGCTAGAAACCATCTCCTCTGTTTTCTACGGGTATGTGTATG  700

seq1  CTCAGCT-AAACCCTTTACCCCATGACGCCCTACGGTTTAACCAAGACCA  749
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTAAAACCCTTTACCCCATGACGCCCTACGGTTTAACCAAGACCA  750

seq1  ACCATCAACGTC-TTTCACAATTGCGCCC-TTCCCCTGTGTTTTGAGCCA  797
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  ACCATCAACGTCTTTTCACAATTGCGCCCTTTCCCCTGTGTTTTGAGCCA  800

seq1  AACATTGCCCCTCAAAAGTATGACCGGAAACCCATCAACAAAGTCAGGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGCCCCTCAAAAGTATGACCGGAAACCCATCAACAAAGTCAGGTT  850

seq1  TTGCTATAGGTACACTCTCAAACCAGAGGACTGTCCTGTCAGCCCATCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATAGGTACACTCTCAAACCAGAGGACTGTCCTGTCAGCCCATCAC  900

seq1  AGCAAGCTGC-TTGCTTATCAAGTGGAAATTCCATGATAGTGTTTCTAGA  946
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  AGCAAGCTGCTTTGCTTATCAAGTGGAAATCCCATGATAGTGTTTCTAGA  950

seq1  TCTCCCTGCTCT-GGGATCACCAGTCCT-AGGCATGGGAAGCCA-GAACT  993
      ||||| |||||| ||||||||||||||| ||||||||||||||| |||||
seq2  TCTCCTTGCTCTGGGGATCACCAGTCCTAAGGCATGGGAAGCCAGGAACT  1000

seq1  TTCCCTGATCACCAGAAG-ACAAG-ACTTGGCTTATATCCCTTGAAGTTC  1041
      |||||||||||||||||| ||||| ||||||| |||||||||  ||||||
seq2  TTCCCTGATCACCAGAAGAACAAGAACTTGGC-TATATCCCTGAAAGTTC  1049

seq1  AT-AAAATA-CACCGTTGG-CTGCTCCTGTGTCAGCTAGATTTG-TCCTG  1087
      || |||||| ||||||||| |||||| ||||||||||||||||| || ||
seq2  ATAAAAATACCACCGTTGGCCTGCTCTTGTGTCAGCTAGATTTGTTCTTG  1099

seq1  GGCTGTTGCC-AGTAACA-GTG-AAAAATAAGCTTTACCT--GGGAAGAT  1132
      ||||| |||| ||||||| ||| |||||||||||||| ||  || |||| 
seq2  GGCTGATGCCAAGTAACAGGTGAAAAAATAAGCTTTAACTTGGGCAAGA-  1148

seq1  TCAACCACC  1141
      |||||||||
seq2  TCAACCACC  1157


seq1: chr8_9595781_9596861
seq2: B6Ng01-321G11.g_68_1166 (reverse)

seq1  GAGAGG-TAATTGGTTAAT-TGCCAGT-AAGGTCTC-ACTCCAACAAACT  46
      |||||| ||||||||||||  |||||| |||||||| | |||||||||| 
seq2  GAGAGGCTAATTGGTTAATAGGCCAGTAAAGGTCTCAATTCCAACAAACC  50

seq1  TTATCTGGATAAAAAATCA-GATAATAGGAAGAATTAT-CTACC-TATTT  93
      |||||||||| |||||||| |||||||||||||||||| ||||| |||||
seq2  TTATCTGGAT-AAAAATCAGGATAATAGGAAGAATTATCCTACCATATTT  99

seq1  TTGCACCAAGACACCATTTCTTTTAACCCTTAGTTACGTAACA--TAAAT  141
      ||||| |||||||||||||||||| |||||||| |||||||||   ||||
seq2  TTGCAACAAGACACCATTTCTTTT-ACCCTTAG-TACGTAACAATAAAAT  147

seq1  AAATACAGCTATTGCTGTTTGT-AAAGCCAG-AAAAAGCACATAGAAATA  189
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  AAATACAGCTATTGCTGTTTGTAAAAGCCAGAAAAAAGCACATAGAAATA  197

seq1  AGTCAACTATTC-TTTAACT-CCATTGTTTTCAGATT-CCCACGAGGCTC  236
      |||||||||||| ||||||| |||||||||||||||| ||||||||||||
seq2  AGTCAACTATTCTTTTAACTCCCATTGTTTTCAGATTCCCCACGAGGCTC  247

seq1  TCGCTTTTCATAG-AAATGGGGCATGCCTTGAGCAG-AATATATTTTCTT  284
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  TCGCTTTTCATAGAAAATGGGGCATGCCTTGAGCAGAAATATATTTTCTT  297

seq1  GACTTCTCCCAACAATACTTGCAAG-AGCCTCTGAAGATTTCTATCTGCA  333
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GACTTCTCCCAACAATACTTGCAAGAAGCCTCTGAAGATTTCTATCTGCA  347

seq1  AGCATGACCTTCAGAACAGCA-GGTGCCCACAGTTACAGCAACTTCTCTG  382
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCATGACCTTCAGAACAGCAGGGTGCCCACAGTTACAGCAACTTCTCTG  397

seq1  CTGG-AAACAACCTGGAGGTAGTTTCAAGGTTAAACTTGCCTGCCACTTT  431
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAACAACCTGGAGGTAGTTTCAAGGTTAAACTTGCCTGCCACTTT  447

seq1  TA-GGAGCTCTTGGCCCTCCCCCAGCACATGCACACTACAGGAAGCAGGT  480
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGCTCTTGGCCCTCCCCCAGCACATGCACACTACAGGAAGCAGGT  497

seq1  GGTGAATCAAAGCTTAAC-AAAAGGAAAATGGGAGCATCCGTCCACATTA  529
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGTGAATCAAAGCTTAACAAAAAGGAAAATGGGAGCATCCGTCCACATTA  547

seq1  ACCTCCCAGCTCCCAGATCCTCCTTGTCAGTCATTAGAAAATAGGATTGG  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCAGCTCCCAGATCCTCCTTGTCAGTCATTAGAAAATAGGATTGG  597

seq1  CCAGTCTTTCTTCCTGGGGTCTTCAGAAGGGCTAGAAATAACAACAGCAT  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTTTCTTCCTGGGGTCTTCAGAAGGGCTAGAAATAACAACAGCAT  647

seq1  TGATCACTTGTCACCATGGGCAGGGCATCCTCTGGAAAAAGCAGCAAGGT  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACTTGTCACCATGGGCAGGGCATCCTCTGGAAAAAGCAGCAAGGT  697

seq1  GACTCCTCTTCCCTGAAACTTACAAAAGTCGCACAGAAGGGCCCCTTGTA  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTCTTCCCTGAAACTTACAAAAGTCGCACAGAAGGGCCCCTTGTA  747

seq1  TTTGATCTCGTTCTCACAGACACACATCACAATATGGCACGAAAACACAA  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTCGTTCTCACAGACACACATCACAATATGGCACGAAAACACAA  797

seq1  GTTGTGAGGAGGAAGCTAGCAGAGGCAACAGACAGGAACTGTTAGGTCCA  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGGAGGAAGCTAGCAGAGGCAACAGACAGGAACTGTTAGGTCCA  847

seq1  CCTAACTAGAGAAACAGTCTTTGGGACCTCCACTTCCATTATCGCCAAGC  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTAGAGAAACAGTCTTTGGGACCTCCACTTCCATTATCGCCAAGC  897

seq1  CATATAAGTTGCTTTTCTCAGTGCCAGGCCAAAATATCTAACTAAGGCAC  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAGTTGCTTTTCTCAGTGCCAGGCCAAAATATCTAACTAAGGCAC  947

seq1  CCTAAGAATTCAGAGATTTTGACTCAAGGTTAAAGGGTACAGGCCACACT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAATTCAGAGATTTTGACTCAAGGTTAAAGGGTACAGGCCACACT  997

seq1  GTCAGGGAAGGTGTGGAGGCAAGGTTGTGAAGTAGCCAGTTATCATATTG  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGAAGGTGTGGAGGCAAGGTTGTGAAGTAGCCAGTTATCATATTG  1047

seq1  CATCTGCAGTCAGGATGCTGGGAAGGGAGGAATTCTGGGAAGAGAGGAAT  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCAGTCAGGATGCTGGGAAGGGAGGAATTCTGGGAAGAGAGGAAT  1097

seq1  TC  1081
      ||
seq2  TC  1099


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