BAC Information

Click to search

BAC

Clone NameB6Ng01-325G04
Chromosome8 (Build37)
Map Location 7,841,071 - 7,841,988
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665127, EG546032
Downstream geneLOC100039836, Efnb2, 9430010O03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325G04.bB6Ng01-325G04.g
ACCGA113457GA113458
length1,211490
definitionB6Ng01-325G04.b B6Ng01-325G04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccatgagagtatcccatggcccactactattctgtttacttttt
aagtagattcactttggatgatgtctgctcctgcctttaatttcagtttt
ccttttcttacgactgactaaatttttgttattcctttcaaataaatttc
tcatctgaattactgtagttctcatttctaccagttatggtttgatttga
ggtttccttcaccttctttatctctactttaataactcatgccatgcttt
aaaacaattgttatagtttattttaaataatagttctatgtcagtgttca
ttttgtttcagctgatatactttattgtatttttttttcatgattttcat
gtatttctaggagccatgccttataaaaacacccaagagtgagtcttggc
gatttcttaatctcctcagtttgccagacccttatgtttgaattaagtta
atttcattggggacacattaaacattctgagcaggcctcttagtttgttg
ggtggaatttggaacaagacttaatccagggctaattaattatagctata
gaggtaaattctttctaagtagttcatccggtataccaagagctgtgagg
gttcccagagtagcagggagcaatgggcagctgtttttctttgtctccat
gactgcagggcatttcattttttcttatatgctgatcattttccttctct
ttgcaagttctactatgcaattcccgatgagtactccacctctaatcaca
ggcggcctaagcggctgtcttggttttctctctgcccgcctatttctgcc
agtgtttcccccaagtcaggatccaatggtcacactgaattttacctgta
tttcttttctaaaagaaacaggaacacttttccttactttaatgtggttc
ttggaattgaacacaagacctcacccgaccagcaagcagtttgccactga
gccacttcagtggaacctgaataaaataaaatctgggtccttgttccact
cacattactcatttatacctctcagcagaatgctggtctttattaacaca
tctattattctacaaaataccgtttgtagtactatctttgtttactttta
taatatttggaagtcttttttctacaatattgtgtagctgccttcattct
cgtatagtggtatgccagacgcttctctctgtaaccattttctggcaatt
taatggttcac

aaatatagaaggtcctcaactgttcctgaaattattccatatattctaac
tcactgttatccacatcagatcatttgtatccttttaaggaaacatccag
cacaataaacaagcacaatacaagcataggtgtgtcttcaggggaatcaa
atatatatgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatac
acacacacacacacacacacacacacatatacacacccacaacacacaca
cacgtgtatgttgtgtgtgtgttttgtggggggtgtgtctataaaaaaat
atataaaatcttgtgtgtatatgagagtgagagaatatataaaaatattt
cagagagagagggggaccctctctatatatatagcgcgcgcgtctatata
gagagacacatatatatagggaggggggggcgcggggggcacacacacgt
aattgtggggggggagagagagcatatatatatacatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_7841071_7841988
seq2: B6Ng01-325G04.b_345_1258

seq1  TCATTTTGTTTCAGCTGATATACTTTATTGTATTTTTTTTTCATGATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGTTTCAGCTGATATACTTTATTGTATTTTTTTTTCATGATTTT  50

seq1  CATGTATTTCTAGGAGCCATGCCTTATAAAAACACCCAAGAGTGAGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATTTCTAGGAGCCATGCCTTATAAAAACACCCAAGAGTGAGTCTT  100

seq1  GGCGATTTCTTAATCTCCTCAGTTTGCCAGACCCTTATGTTTGAATTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGATTTCTTAATCTCCTCAGTTTGCCAGACCCTTATGTTTGAATTAAG  150

seq1  TTAATTTCATTGGGGACACATTAAACATTCTGAGCAGGCCTCTTAGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCATTGGGGACACATTAAACATTCTGAGCAGGCCTCTTAGTTTG  200

seq1  TTGGGTGGAATTTGGAACAAGACTTAATCCAGGGCTAATTAATTATAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGGAATTTGGAACAAGACTTAATCCAGGGCTAATTAATTATAGCT  250

seq1  ATAGAGGTAAATTCTTTCTAAGTAGTTCATCCGGTATACCAAGAGCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGTAAATTCTTTCTAAGTAGTTCATCCGGTATACCAAGAGCTGTG  300

seq1  AGGGTTCCCAGAGTAGCAGGGAGCAATGGGCAGCTGTTTTTCTTTGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCCCAGAGTAGCAGGGAGCAATGGGCAGCTGTTTTTCTTTGTCTC  350

seq1  CATGACTGCAGGGCATTTCATTTTTTCTTATATGCTGATCATTTTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTGCAGGGCATTTCATTTTTTCTTATATGCTGATCATTTTCCTTC  400

seq1  TCTTTGCAAGTTCTACTATGCAATTCCCGATGAGTACTCCACCTCTAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCAAGTTCTACTATGCAATTCCCGATGAGTACTCCACCTCTAATC  450

seq1  ACAGGCGGCCTAAGCGGCTGTCTTGGTTTTCTCTCTGCCCGCCTATTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCGGCCTAAGCGGCTGTCTTGGTTTTCTCTCTGCCCGCCTATTTCT  500

seq1  GCCAGTGTTTCCCCCAAGTCAGGATCCAATGGTCACACTGAATTTTACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGTTTCCCCCAAGTCAGGATCCAATGGTCACACTGAATTTTACCT  550

seq1  GTATTTCTTTTCTAAAAGAAACAGGAACACTTTTCCTTACTTTAATGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCTTTTCTAAAAGAAACAGGAACACTTTTCCTTACTTTAATGTGG  600

seq1  TTCTTGGAATTGAACACAAGACCTCACCCGACCAGCAAGCAGTTTGCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGAATTGAACACAAGACCTCACCCGACCAGCAAGCAGTTTGCCAC  650

seq1  TGAGCCACTTCAGGTGGAACCTGAATAAAATAAAATCTGGGTCCTTGTTC  700
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACTTCA-GTGGAACCTGAATAAAATAAAATCTGGGTCCTTGTTC  699

seq1  CACTCACATTACTCATTTATAACCTCTCAGCAG-ATGCTGGTCTTTATTA  749
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  CACTCACATTACTCATTTAT-ACCTCTCAGCAGAATGCTGGTCTTTATTA  748

seq1  CCACATCTAATTATCTTACAAAATAACGTTTGTAGTACTATCTATGTTTA  799
       ||||||| |||||  ||||||||| ||||||||||||||||| ||||||
seq2  ACACATCT-ATTATTCTACAAAATACCGTTTGTAGTACTATCTTTGTTTA  797

seq1  CTTTTAT-ATATTTGAAAAGTCTTTTTTCTTACATA-TGTGTAGCTG-CT  846
      ||||||| |||||||  |||||||||||||   ||| |||||||||| ||
seq2  CTTTTATAATATTTG-GAAGTCTTTTTTCTACAATATTGTGTAGCTGCCT  846

seq1  TCATTTCTGTTAT-GTGTTATGCAGACACGCTT-TCTCTGTAGCATTTTT  894
      ||| ||||  ||| ||| |||||  | |||||| |||||||| |  ||||
seq2  TCA-TTCTCGTATAGTGGTATGC-CAGACGCTTCTCTCTGTAACCATTTT  894

seq1  CCTTTGCAATTTTTAATGGTTCAC  918
      |  | ||||  |||||||||||||
seq2  C--TGGCAA--TTTAATGGTTCAC  914


| Home | SequenceCutter | Blast | Download |