BAC Information

Click to search

BAC

Clone NameB6Ng01-325J08
Chromosome8 (Build37)
Map Location 72,363,743 - 72,537,584
singlet/doubletdoublet
Overlap genePbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649
Upstream geneLpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4
Downstream gene9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325J08.bB6Ng01-325J08.g
ACCGA113605GA113606
length1,128627
definitionB6Ng01-325J08.b B6Ng01-325J08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,363,743 - 72,364,871)(72,536,958 - 72,537,584)
sequence
gaattcctgggaagtccagttaatcttaacttgctgttccccaacccccc
aaaaaagaaagcaaattttatacatcctgacagagcatgtacttcctttc
ccaacggttctctaaacagcagtggatataacaactgcgaaaatgtcatt
tgcaattggatgccataaataattgagatgcgatttaaaggccatgggag
catggcaggagggttggcgcagtggttaagagctgttactgctcttgcag
aggaccgaggtttaattcccaacacccacctggtggctcacagtcatcca
cggcttcagtcccagagagcccgggatcctcttctgacctcaccaggcac
aggcatgcacatggtacagatacagacatgcagaccaagcacccatacac
ataaaacagtgtcgtttttaaagtgcatggcagggctggagaggtggttc
agtggctaagtgctcttgtggctgctgtagtcaccccagtttggttccca
gcattcatgctgggctgtttgtgtgcctccgtgtccaaagcagcctctgt
tctctctggcctctgcacctgcatgcatgctgcatgcctacctacacacg
agaaataaaaatggatcaggagtacacgggaagccgtgtgaagggtgtgt
acaggtactccaggggcttgcataaggggcttgagcagctatctcaaatc
atttggatgcaaagacacaaagactctgcagcctgatagcctgtcagtgc
ggtaggtggagccgacttcatctctcctggctggaccaagtcatcaagaa
cttcccacttcccacctcaccatgtgaggccactcatctttattgtcctg
gcaaatttgattttttaatttttttttctattttttgtgaatttcccatc
atgcattccaattctacttgcatccccatcccctcgcacctgccctctgc
cctgcagccctcccaccaaaagaaaagagtctccttgtgggtactgcagt
gtgtcacaatgtgccctacagtgccccctcttgtcacacttccttactta
caaatgtcattgcagtgaatcactgggcctggttcgagcctctggccttc
tacaagatactggatctcacaaggactt
gaattcagtccctctgacccacaaggtgcaggaaggagactgattcctgc
aatgtgttacctgacctctgtgcactgtgtggcaggcacacatcaaaata
ataatgaagctgggcgtggtggcgcacgcctttaatcccagcactctgga
ggcggaggcagaggcaggcagatttctgagttcgaggccagcctggtcta
cagagttccaggacagccagggctacacagagaaaccctgtctccaaaca
ccaaaataaaataaatgaatagataataaataaagagggtttttgtttgt
tttttctttttcttcaaacagccttaccatgtaaccctggctggcctgaa
actcacaaaatttccctgcctgtgtttcctcaatagtggtgtttaaggtg
tgtgccaccatgcccagcattaaagatctatttttatttatatgtatatt
tgtgtgtgtgcaagcaatgccccagaaagccagaagaggctattaaattc
cctggagatatgggcagttgtaagccaaaaatcaagtcccctggaaaggc
agtatgtgcccttaactgttgaacagtctcttcagcccagtacatgtaac
tgtttttaagaggggggttggggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_72363743_72364871
seq2: B6Ng01-325J08.b_47_1174

seq1  GAATTCCTGGGAAGTCCAGTTAATCTTAACTTGCTGTTCCCCAACCCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGAAGTCCAGTTAATCTTAACTTGCTGTTCCCCAACCCCCC  50

seq1  AAAAAAGAAAGCAAATTTTATACATCCTGACAGAGCATGTACTTCCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAGCAAATTTTATACATCCTGACAGAGCATGTACTTCCTTTC  100

seq1  CCAACGGTTCTCTAAACAGCAGTGGATATAACAACTGCGAAAATGTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACGGTTCTCTAAACAGCAGTGGATATAACAACTGCGAAAATGTCATT  150

seq1  TGCAATTGGATGCCATAAATAATTGAGATGCGATTTAAAGGCCATGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTGGATGCCATAAATAATTGAGATGCGATTTAAAGGCCATGGGAG  200

seq1  CATGGCAGGAGGGTTGGCGCAGTGGTTAAGAGCTGTTACTGCTCTTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGGAGGGTTGGCGCAGTGGTTAAGAGCTGTTACTGCTCTTGCAG  250

seq1  AGGACCGAGGTTTAATTCCCAACACCCACCTGGTGGCTCACAGTCATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCGAGGTTTAATTCCCAACACCCACCTGGTGGCTCACAGTCATCCA  300

seq1  CGGCTTCAGTCCCAGAGAGCCCGGGATCCTCTTCTGACCTCACCAGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTCAGTCCCAGAGAGCCCGGGATCCTCTTCTGACCTCACCAGGCAC  350

seq1  AGGCATGCACATGGTACAGATACAGACATGCAGACCAAGCACCCATACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGCACATGGTACAGATACAGACATGCAGACCAAGCACCCATACAC  400

seq1  ATAAAACAGTGTCGTTTTTAAAGTGCATGGCAGGGCTGGAGAGGTGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAGTGTCGTTTTTAAAGTGCATGGCAGGGCTGGAGAGGTGGTTC  450

seq1  AGTGGCTAAGTGCTCTTGTGGCTGCTGTAGTCACCCCAGTTTGGTTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTAAGTGCTCTTGTGGCTGCTGTAGTCACCCCAGTTTGGTTCCCA  500

seq1  GCATTCATGCTGGGCTGTTTGTGTGCCTCCGTGTCCAAAGCAGCCTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCATGCTGGGCTGTTTGTGTGCCTCCGTGTCCAAAGCAGCCTCTGT  550

seq1  TCTCTCTGGCCTCTGCACCTGCATGCATGCTGCATGCCTACCTACACACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGGCCTCTGCACCTGCATGCATGCTGCATGCCTACCTACACACG  600

seq1  AGAAATAAAAATGGATCAGGAGTACACGGGAAGCCGTGTGAAGGGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAAAATGGATCAGGAGTACACGGGAAGCCGTGTGAAGGGTGTGT  650

seq1  ACAGGTACTCCAGGGGCTTGCATAAGGGGCTTGAGCAGCTATCTCAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTACTCCAGGGGCTTGCATAAGGGGCTTGAGCAGCTATCTCAAATC  700

seq1  ATTTGGATGCAAAGACACAAAGACTCTGCAGCCTGATAGCCTGTCAGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGATGCAAAGACACAAAGACTCTGCAGCCTGATAGCCTGTCAGTGC  750

seq1  GGTAGGTGGAGCCGACTTCATCTCTCCTGGCTGGACCAAGTCATCAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTGGAGCCGACTTCATCTCTCCTGGCTGGACCAAGTCATCAAGAA  800

seq1  CTTCCCACTTCCCACCTCACCATGTGAGGCCACTCATCTTTATTGTCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACTTCCCACCTCACCATGTGAGGCCACTCATCTTTATTGTCCTG  850

seq1  GCAAATTTGATTTTTTAATTTTTTTTTCTATTTTTTGTGAATTTCCCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTTGATTTTTTAATTTTTTTTTCTATTTTTTGTGAATTTCCCATC  900

seq1  ATGCATTCCAATTCTACTTGCATCCCCATCCCCTCGCACCTGCCCTCTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTCCAATTCTACTTGCATCCCCATCCCCTCGCACCTGCCCTCTGC  950

seq1  CCTGCAGCCCCCCCACCAAAAGAAAAGAGTCTCCTTGTGGGTACTGCAGT  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGCCCTCCCACCAAAAGAAAAGAGTCTCCTTGTGGGTACTGCAGT  1000

seq1  GTGTCACAATGTGCCCTACAGTGCACCCTCTTGTCCACACTTCTTTACTT  1050
      |||||||||||||||||||||||| ||||||||| |||||||| ||||||
seq2  GTGTCACAATGTGCCCTACAGTGCCCCCTCTTGT-CACACTTCCTTACTT  1049

seq1  ACAAATGTTCATTGCAGTGAATCACT-GGCCTGGTTCGAGGCCTCTGG-C  1098
      ||||||| |||||||||||||||||| |||||||||||| |||||||| |
seq2  ACAAATG-TCATTGCAGTGAATCACTGGGCCTGGTTCGA-GCCTCTGGCC  1097

seq1  TTCTACCAG-TACTGGATCCTCACCAGGACTT  1129
      |||||| || |||||||| ||||| |||||||
seq2  TTCTACAAGATACTGGAT-CTCACAAGGACTT  1128

seq1: chr8_72536958_72537584
seq2: B6Ng01-325J08.g_66_692 (reverse)

seq1  TTCCCCCCAACCCCCCTCTTAAAAACAGTTACATGTACTGGGCTGAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCCAACCCCCCTCTTAAAAACAGTTACATGTACTGGGCTGAAGAG  50

seq1  ACTGTTCAACAGTTAAGGGCACATACTGCCTTTCCAGGGGACTTGATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCAACAGTTAAGGGCACATACTGCCTTTCCAGGGGACTTGATTTT  100

seq1  TGGCTTACAACTGCCCATATCTCCAGGGAATTTAATAGCCTCTTCTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTACAACTGCCCATATCTCCAGGGAATTTAATAGCCTCTTCTGGCT  150

seq1  TTCTGGGGCATTGCTTGCACACACACAAATATACATATAAATAAAAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGGCATTGCTTGCACACACACAAATATACATATAAATAAAAATAG  200

seq1  ATCTTTAATGCTGGGCATGGTGGCACACACCTTAAACACCACTATTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAATGCTGGGCATGGTGGCACACACCTTAAACACCACTATTGAGG  250

seq1  AAACACAGGCAGGGAAATTTTGTGAGTTTCAGGCCAGCCAGGGTTACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGGCAGGGAAATTTTGTGAGTTTCAGGCCAGCCAGGGTTACATG  300

seq1  GTAAGGCTGTTTGAAGAAAAAGAAAAAACAAACAAAAACCCTCTTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGCTGTTTGAAGAAAAAGAAAAAACAAACAAAAACCCTCTTTATTT  350

seq1  ATTATCTATTCATTTATTTTATTTTGGTGTTTGGAGACAGGGTTTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTATTCATTTATTTTATTTTGGTGTTTGGAGACAGGGTTTCTCTG  400

seq1  TGTAGCCCTGGCTGTCCTGGAACTCTGTAGACCAGGCTGGCCTCGAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCTGGCTGTCCTGGAACTCTGTAGACCAGGCTGGCCTCGAACTC  450

seq1  AGAAATCTGCCTGCCTCTGCCTCCGCCTCCAGAGTGCTGGGATTAAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTGCCTGCCTCTGCCTCCGCCTCCAGAGTGCTGGGATTAAAGGC  500

seq1  GTGCGCCACCACGCCCAGCTTCATTATTATTTTGATGTGTGCCTGCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCCACCACGCCCAGCTTCATTATTATTTTGATGTGTGCCTGCCACA  550

seq1  CAGTGCACAGAGGTCAGGTAACACATTGCAGGAATCAGTCTCCTTCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCACAGAGGTCAGGTAACACATTGCAGGAATCAGTCTCCTTCCTGC  600

seq1  ACCTTGTGGGTCAGAGGGACTGAATTC  627
      |||||||||||||||||||||||||||
seq2  ACCTTGTGGGTCAGAGGGACTGAATTC  627