BAC Information

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BAC

Clone NameB6Ng01-329M01
Chromosome5 (Build37)8 (Build37)
Map Location 88,311,938 - 88,313,08158,452,107 - 58,452,542
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUgt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494
Downstream geneOdam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329M01.bB6Ng01-329M01.g
ACCGA116623GA116624
length1,131964
definitionB6Ng01-329M01.b B6Ng01-329M01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,311,938 - 88,313,081)(58,452,107 - 58,452,542)
sequence
gaattcatttatttcaaagaattgagtgtttattctgagtgtcaatattt
tatattctaatgttctaggatcacaagtattctgatgaaaaattatcaat
taatttccattatgtgggaattacttggttaatttgttcttatcatgtaa
tgaaaacaaaagctaatggctttctaaaacaaagtttaataaaaactttc
ctaacaaaatggaacttagagtttgagcattggatatctgtgcagcaaat
ggaatccctaaaagtctaaatcatttattaaaataacatgaccttttatc
atatgaaagaagagaagttaccgctaggttttatatgtatcaaaaaaatc
tcaacattagatatttagactctgctagaatgtgatagctaatatactga
aactcggtaaaaaaaaaaaatctcaagactagatatttaggctatgttaa
aatgtgatagctaatttactgaaactctctacttaatataataaccattc
caggcttaaaaatgtagacaattaattaagtggttaaactagatagaagg
gttttttttcatatttacacacacacacacacacacacacacacacacac
acacacacatgatatgtgtatatagacagactttggcttacttttgaata
tttccaaattaaactaaatatactgtaagttaacagtcacttgagaattt
ctgttacatcccacatgacccaggcagctaaccccactactgagtcagaa
atttgccaaggatttgaactaaactgagatggcaatatcctgatgtgaat
agcttcattttgctttactcttcaagtctgaagataattaagaggcttta
tttgaattttccattagctgactatcttaaagaaaagtagttgagtggct
ggacagaaggctttatggtttaaaagcacttaccttcttctcagcacctc
acggtaccttctcaaaattgaccatataaacggtcacaaacagcctcaac
agatacaagaaaattgaaatatccatgcatcctgtcagatccaccacaga
ctagtggtcttcagagcattaaaaaacaacgaaagccccgatccatgcag
ctgaacatggcctactcatgatactcggaca
gaattctttgtttagctcagtacctcatttttaacatagtagtttggttt
tctggagtccaacatcttgagttctttatatatatttgatattagccccc
tatcagatttagtattggtaaagatcttttcctaatctgttggttttctt
ttggtcttattgacagtgtcctttgccttacagaagctttgcaattttat
gaggttccatttgtctattcctgatcttacagccctaaccgttggtattc
aggaatctttcccctgtgcccatatcttcaagattcatcaccagtttctc
ctctataagtttcagagtctctgtttttatgtggagttctttaatccaca
tagacttgagatttgtataatgaggtaagaatggatcaatttgcattctt
ctacatgcagactgccagttgatccagcaccttctgttgaagatgttgtc
ttctttccactggatggttttagttcctttgtcaaagatcaagtggtcat
aggtgtgtgggttcatttctgggtcttcaattctgttccattgatctacc
tatctgccaacataccagtaacatgcaggtttttttttttcataattgct
ctgcagtacatcttgaggtcagggatggtgattccagcagaggttctttg
attgctgagaatagtttttgctatcctaggatttttgttattccagatga
atttgcaaattgccatttctttcctttttttttttccctatgaatgacat
tttattcagtcattttctttacaactgaaactctgggaattcaaaattaa
catccttgcctgtgagcttcttgtacacaccagaaaaagtttcaaccttg
tgttccacgttgttctgctgtgctttgactttctaactcagtgaagaaat
tgagttggaattttgatggggattgcattgaatctgtagattgcttttgg
cagatagccatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_88311938_88313081
seq2: B6Ng01-329M01.b_47_1177 (reverse)

seq1  TGTCCGAGTTATCATTGAGTAGGGCATTGTTCAGCTTCCATGGGTTTGTG  50
      |||||||| ||||| |||||||| || |||||||| | |||||   |  |
seq2  TGTCCGAG-TATCA-TGAGTAGGCCA-TGTTCAGC-TGCATGG--ATCGG  44

seq1  GGCTTTCTGTTG-TTTTTATTGCTCTTGAAGACCAACCTTAGTCTGTGGT  99
      ||||||| |||| |||||| ||||| |||||||||    |||||||||||
seq2  GGCTTTC-GTTGTTTTTTAATGCTC-TGAAGACCA---CTAGTCTGTGGT  89

seq1  -GATCTGACAGGATGCATGGGATATTTCAATTTTCTTGTATCTGTTGAGG  148
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGATCTGACAGGATGCAT-GGATATTTCAATTTTCTTGTATCTGTTGAGG  138

seq1  CCTGTTTTGTGACCGTTTATATGGTCAATTTTGGAGAAGGTACCGTGAGG  198
       ||| ||||||||||||||||||||||||||| |||||||||||||||||
seq2  -CTG-TTTGTGACCGTTTATATGGTCAATTTT-GAGAAGGTACCGTGAGG  185

seq1  TGCTGAGAAGAAGGTAAGTGCTTTT-AACCATAAAGCCTTCTGTCCAGCC  247
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGCTGAGAAGAAGGTAAGTGCTTTTAAACCATAAAGCCTTCTGTCCAGCC  235

seq1  ACTCAACTACTTTTCTTTAAGATAGTCAGCTAATGGAAAATTCAAATAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACTACTTTTCTTTAAGATAGTCAGCTAATGGAAAATTCAAATAAA  285

seq1  GCCTCTTAATTATCTTCAGACTTGAAGAGTAAAGCAAAATGAAGCTATTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTAATTATCTTCAGACTTGAAGAGTAAAGCAAAATGAAGCTATTC  335

seq1  ACATCAGGATATTGCCATCTCAGTTTAGTTCAAATCCTTGGCAAATTTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGGATATTGCCATCTCAGTTTAGTTCAAATCCTTGGCAAATTTCT  385

seq1  GACTCAGTAGTGGGGTTAGCTGCCTGGGTCATGTGGGATGTAACAGAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGTAGTGGGGTTAGCTGCCTGGGTCATGTGGGATGTAACAGAAAT  435

seq1  TCTCAAGTGACTGTTAACTTACAGTATATTTAGTTTAATTTGGAAATATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGTGACTGTTAACTTACAGTATATTTAGTTTAATTTGGAAATATT  485

seq1  CAAAAGTAAGCCAAAGTCTGTCTATATACACATATCATGTGTGTGTGTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTAAGCCAAAGTCTGTCTATATACACATATCATGTGTGTGTGTGT  535

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAATATGAAAAAAAACCCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAATATGAAAAAAAACCCTT  585

seq1  CTATCTAGTTTAACCACTTAATTAATTGTCTACATTTTTAAGCCTGGAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAGTTTAACCACTTAATTAATTGTCTACATTTTTAAGCCTGGAAT  635

seq1  GGTTATTATATTAAGTAGAGAGTTTCAGTAAATTAGCTATCACATTTTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTATATTAAGTAGAGAGTTTCAGTAAATTAGCTATCACATTTTAA  685

seq1  CATAGCCTAAATATCTAGTCTTGAGATTTTTTTTTTTTTACCGAGTTTCA  747
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATAGCCTAAATATCTAGTCTTGAGA-TTTTTTTTTTTTACCGAGTTTCA  734

seq1  GTATATTAGCTATCACATTCTAGCAGAGTCTAAATATCTAATGTTGAGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTAGCTATCACATTCTAGCAGAGTCTAAATATCTAATGTTGAGAT  784

seq1  TTTTTTGATACATATAAAACCTAGCGGTAACTTCTCTTCTTTCATATGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGATACATATAAAACCTAGCGGTAACTTCTCTTCTTTCATATGAT  834

seq1  AAAAGGTCATGTTATTTTAATAAATGATTTAGACTTTTAGGGATTCCATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCATGTTATTTTAATAAATGATTTAGACTTTTAGGGATTCCATT  884

seq1  TGCTGCACAGATATCCAATGCTCAAACTCTAAGTTCCATTTTGTTAGGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCACAGATATCCAATGCTCAAACTCTAAGTTCCATTTTGTTAGGAA  934

seq1  AGTTTTTATTAAACTTTGTTTTAGAAAGCCATTAGCTTTTGTTTTCATTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTATTAAACTTTGTTTTAGAAAGCCATTAGCTTTTGTTTTCATTA  984

seq1  CATGATAAGAACAAATTAACCAAGTAATTCCCACATAATGGAAATTAATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAAGAACAAATTAACCAAGTAATTCCCACATAATGGAAATTAATT  1034

seq1  GATAATTTTTCATCAGAATACTTGTGATCCTAGAACATTAGAATATAAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTTTCATCAGAATACTTGTGATCCTAGAACATTAGAATATAAAA  1084

seq1  TATTGACACTCAGAATAAACACTCAATTCTTTGAAATAAATGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACACTCAGAATAAACACTCAATTCTTTGAAATAAATGAATTC  1131

seq1: chr8_58452107_58452542
seq2: B6Ng01-329M01.g_321_942

seq1  TTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTA  50
      | |||||||||||||||||||||||||  |  || ||| |||||||||||
seq2  TCTTTCCCCTGTGCCCATATCTTCAAGATTCATCACCAGTTTCTCCTCTA  50

seq1  TAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGAT  100
      |||||||||| ||||||| ||||||||| ||||| || |||||| |||| 
seq2  TAAGTTTCAGAGTCTCTGTTTTTATGTGGAGTTCTTTAATCCACATAGAC  100

seq1  TTGACCTTAGTACAAGGAGATAATTAATAGCT-GAGTAGCACTCCACT--  147
      ||||  || ||| || ||| |||  ||| | |  | | ||| ||  ||  
seq2  TTGAGATTTGTATAATGAGGTAA-GAATGGATCAATTTGCATTCTTCTAC  149

seq1  GTGTAAA--------TGTACCA-CATTTTCTG-----------------T  171
       || | |        ||  ||| ||  |||||                 |
seq2  ATGCAGACTGCCAGTTGATCCAGCACCTTCTGTTGAAGATGTTGTCTTCT  199

seq1  ATCCA--------------TTCCTCTGT----------------------  185
       ||||              ||||| |||                      
seq2  TTCCACTGGATGGTTTTAGTTCCTTTGTCAAAGATCAAGTGGTCATAGGT  249

seq1  -TGAGGG-GCA--TCTGGG-------TTCT-TTCCA-GCTTCTGGCTAT-  221
       || |||  ||  ||||||       |||| |||||    |||  |||| 
seq2  GTGTGGGTTCATTTCTGGGTCTTCAATTCTGTTCCATTGATCTACCTATC  299

seq1  --------TATAAATAA----------------------AGCTGCTAT--  239
              ||  | |||                      |  |||| |  
seq2  TGCCAACATACCAGTAACATGCAGGTTTTTTTTTTTCATAATTGCTCTGC  349

seq1  -GAACAT---------AG---TGG-------AGCATGTGTTC--------  261
       | ||||         ||   |||       ||||   ||||        
seq2  AGTACATCTTGAGGTCAGGGATGGTGATTCCAGCAGAGGTTCTTTGATTG  399

seq1  ---------------------------------------------ATTTT  266
                                                   | |||
seq2  CTGAGAATAGTTTTTGCTATCCTAGGATTTTTGTTATTCCAGATGAATTT  449

seq1  ACAAGTTGGAACCTCTT---TATTTTTTTTAAACTATGAATGACACTATA  313
       ||| |||  |  ||||   | ||||||||   |||||||||||| | ||
seq2  GCAAATTGCCATTTCTTTCCTTTTTTTTTTTCCCTATGAATGACATTTTA  499

seq1  TTCAGTCATTTTCTTTACAATTGAAACTCTGGGAATTCAAAATTAACATC  363
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCAGTCATTTTCTTTACAACTGAAACTCTGGGAATTCAAAATTAACATC  549

seq1  CTTGCCTATGAGCTTCTTGTACACAGCAGAGAAAGTTCCGACCTTGTGTT  413
      ||||||| ||||||||||||||||| |||| |||||| | ||||||||||
seq2  CTTGCCTGTGAGCTTCTTGTACACACCAGAAAAAGTTTCAACCTTGTGTT  599

seq1  CCATGTTGTTCTGCTGTGCTTTG  436
      ||| |||||||||||||||||||
seq2  CCACGTTGTTCTGCTGTGCTTTG  622