BAC Information

Click to search

BAC

Clone NameB6Ng01-330E15
Chromosome8 (Build37)
Map Location 126,834,243 - 126,986,953
singlet/doubletdoublet
Overlap geneGalnt2, Pgbd5
Upstream geneFanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535
Downstream geneCog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1, Sipa1l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330E15.bB6Ng01-330E15.g
ACCGA117009GA117010
length1,0001,156
definitionB6Ng01-330E15.b B6Ng01-330E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,985,955 - 126,986,953)(126,834,243 - 126,835,420)
sequence
gaattcatagatcatccctggtttcaaatcttgcgaaccccatttcatac
tacagcctcccttccaccttgaaaatctgagctcttcaaataacacattt
ctgggttactggatcatgcaagtgcaaaccgagtcagaacccagcgtctc
tcatggggcacaaagcctgtgttctgccagtcggctgcattcagacccct
ctcagcccttctctgtgcagcaacaatgtttcagtcagtagcaaccttca
gaactctcagatgagaccattttcttcttcctccctctgtccctccccct
gtccttccctctgtttggtccccacttccttcttccttccaatatgacta
acacaaacacaggattttcaacagttatctcagtgagctttgccactgta
taagcagggcagaatatagaacatgtcccatcctctctagaaagttctct
catggattttctaccttttgtggaagaacacggggcagataagttcaaca
tggtgtattcaaatatagcaggaacggcggggccgcctctatgcggacgc
tgggtgccatgcagctgcaaaagcatctcctgcaggaggacctaattgag
gactgcctgagagaccaagaattgctggtgcaaataatgccaaccaatca
agaattgctgtctagaatagatactgtctttggcccagtgggggcgtggg
tggaaggtattaaaggagcttgcagcagtgctcagatgagcttgctacga
tgttttctcacctgctcccagagtctgtgtcattgactctgtacccaact
cacccccaagccccgagaacaggtagggttggacagagagctacccatgg
cacaggcatgctcaacattaaaaataaaaaaaccttagtttctcgtgggg
gaaatcaaggaggtgaaaacatgagcttggctccgctgaccacttctata
ttctagcctggggaattgaggccaaaaggatggtggcattcctgggcagt

gaattcacagctcctgcatctcaccctgagcagaagtgtcatgaacatgg
ggacggacggcgtggacgtggggacggacaccatgactctgttagtagtt
ctgtcacttgttactctcagaccacggtgaaaatgatctctgaccccggg
cttttatctgcagagcagtcacagtataaccgtgactgtccctcggctgt
cagtaagctccgacatctgtggaaatacggaaaggcttgtgaacccctgg
cttctgtgccggtgttggtcattgctgtcctgtgaccagtggcttgtggg
aatcaggttgagcagaccaggctgtgctctgggaagctttgttcttgact
cgtgtggcacgccacgccgacctcgaggactgaccctgggtatgctgtgt
tgcttcattgctgtgtggctctttctgtagcagatcagcagaaaaccagg
ttaaggaaatacctttgaaaccatgacctgcctactactgagggaatcag
agcagggaaaccagactcagcaggctggccgggtaaatcaggtcaaccca
ggctggcccccgtcggctgcccatttgaaagccttacgcgtttgtttgca
atgctggaattgaacccaggggctcatacatgctgggcaagtgtccccca
ctagggtacatctccagacctttttcctttttattttgagacagggcctc
accaacttaccttggctgatttttgaactcactctatagcccaggcaggc
cttaaacttgggatccttctgcctctgccctttgccctctgccctctgcc
ctctgccctttgccctctgccctctgcccagctcggcttacaaatacata
gtggcaggcccagttcttttgtctttgaaatggaaaagcttcgtgtagtg
tatgaaggtggcagaatggcacgatacctttctgggtcagttgggctaca
ctctacgcttggtcacgtgatacggtgttccttgctgatcagcagtcagg
acattgattaatgatgatctgtctgttgctgttgcaaacatgtgccctaa
gatactgactttaatgattaaccatgctgcaaaccttcctcagctaaaac
ttaagtcgacttccacaataaatgccatttacctatgtaatcctaccaat
tcaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_126985955_126986953
seq2: B6Ng01-330E15.b_49_1048 (reverse)

seq1  ACTGGCCAGGAATGCC-CCATCC-TTTGGCCTCCACTTCCCAGGCTGGAA  48
      |||| ||||||||||| |||||| ||||||||| | | |||||||| |||
seq2  ACTGCCCAGGAATGCCACCATCCTTTTGGCCTCAATTCCCCAGGCTAGAA  50

seq1  TTATAGATGT-GTCAGC-GAGCCCAGCTCATGTTTTTCACCTCCTTGATT  96
       |||||| || |||||| ||||| |||||||| |||||||||||||||||
seq2  -TATAGAAGTGGTCAGCGGAGCCAAGCTCATG-TTTTCACCTCCTTGATT  98

seq1  TCCCCCACGAGAAACTTAAGATTTTTTTTTTTTTAATGTTTGAGCATTGC  146
      ||||||||||||||| |||| ||||||| ||||||||| ||||||| |||
seq2  TCCCCCACGAGAAAC-TAAGGTTTTTTTATTTTTAATG-TTGAGCA-TGC  145

seq1  CTGTGCCCTGGGTAGCTCTCTGTCCAACCCTACCTGTTCTCGGGGCTTGG  196
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCATGGGTAGCTCTCTGTCCAACCCTACCTGTTCTCGGGGCTTGG  195

seq1  GGGTGAGTT-GGTACAGAGTCAATGACACAGACTCTGGGAGCAGGTGAG-  244
      ||||||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  GGGTGAGTTGGGTACAGAGTCAATGACACAGACTCTGGGAGCAGGTGAGA  245

seq1  AAACATCGTAGCAAGCTCATCTGAGCACTGCTGCAAGCTCCTTTAATACC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCGTAGCAAGCTCATCTGAGCACTGCTGCAAGCTCCTTTAATACC  295

seq1  TTCCACCCACGCCCCCACTGGGCCAAAGACAGTATCTATTCTAGACAGCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCCACGCCCCCACTGGGCCAAAGACAGTATCTATTCTAGACAGCA  345

seq1  ATTCTTGATTGGTTGGCATTATTTGCACCAGCAATTCTTGGTCTCTCAGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGATTGGTTGGCATTATTTGCACCAGCAATTCTTGGTCTCTCAGG  395

seq1  CAGTCCTCAATTAGGTCCTCCTGCAGGAGATGCTTTTGCAGCTGCATGGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTCAATTAGGTCCTCCTGCAGGAGATGCTTTTGCAGCTGCATGGC  445

seq1  ACCCAGCGTCCGCATAGAGGCGGCCCCGCCGTTCCTGCTATATTTGAATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCGTCCGCATAGAGGCGGCCCCGCCGTTCCTGCTATATTTGAATA  495

seq1  CACCATGTTGAACTTATCTGCCCCGTGTTCTTCCACAAAAGGTAGAAAAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTTGAACTTATCTGCCCCGTGTTCTTCCACAAAAGGTAGAAAAT  545

seq1  CCATGAGAGAACTTTCTAGAGAGGATGGGACATGTTCTATATTCTGCCCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGAGAACTTTCTAGAGAGGATGGGACATGTTCTATATTCTGCCCT  595

seq1  GCTTATACAGTGGCAAAGCTCACTGAGATAACTGTTGAAAATCCTGTGTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATACAGTGGCAAAGCTCACTGAGATAACTGTTGAAAATCCTGTGTT  645

seq1  TGTGTTAGTCATATTGGAAGGAAGAAGGAAGTGGGGACCAAACAGAGGGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAGTCATATTGGAAGGAAGAAGGAAGTGGGGACCAAACAGAGGGA  695

seq1  AGGACAGGGGGAGGGACAGAGGGAGGAAGAAGAAAATGGTCTCATCTGAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGGGGAGGGACAGAGGGAGGAAGAAGAAAATGGTCTCATCTGAG  745

seq1  AGTTCTGAAGGTTGCTACTGACTGAAACATTGTTGCTGCACAGAGAAGGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAAGGTTGCTACTGACTGAAACATTGTTGCTGCACAGAGAAGGG  795

seq1  CTGAGAGGGGTCTGAATGCAGCCGACTGGCAGAACACAGGCTTTGTGCCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGGGTCTGAATGCAGCCGACTGGCAGAACACAGGCTTTGTGCCC  845

seq1  CATGAGAGACGCTGGGTTCTGACTCGGTTTGCACTTGCATGATCCAGTAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAGACGCTGGGTTCTGACTCGGTTTGCACTTGCATGATCCAGTAA  895

seq1  CCCAGAAATGTGTTATTTGAAGAGCTCAGATTTTCAAGGTGGAAGGGAGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAATGTGTTATTTGAAGAGCTCAGATTTTCAAGGTGGAAGGGAGG  945

seq1  CTGTAGTATGAAATGGGGTTCGCAAGATTTGAAACCAGGGATGATCTATG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTATGAAATGGGGTTCGCAAGATTTGAAACCAGGGATGATCTATG  995

seq1  AATTC  999
      |||||
seq2  AATTC  1000

seq1: chr8_126834243_126835420
seq2: B6Ng01-330E15.g_70_1225

seq1  GAATTCACAGCTCCTGCATCTCACCCTGAGCAGAAGTGTCATGAACATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCTCCTGCATCTCACCCTGAGCAGAAGTGTCATGAACATGG  50

seq1  GGACGGACGGCGTGGACGTGGGGACGGACACCATGACTCTGTTAGTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGACGGCGTGGACGTGGGGACGGACACCATGACTCTGTTAGTAGTT  100

seq1  CTGTCACTTGTTACTCTCAGACCACGGTGAAAATGATCTCTGACCCCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACTTGTTACTCTCAGACCACGGTGAAAATGATCTCTGACCCCGGG  150

seq1  CTTTTATCTGCAGAGCAGTCACAGTATAACCGTGACTGTCCCTCGGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCTGCAGAGCAGTCACAGTATAACCGTGACTGTCCCTCGGCTGT  200

seq1  CAGTAAGCTCCGACATCTGTGGAAATACGGAAAGGCTTGTGAACCCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGCTCCGACATCTGTGGAAATACGGAAAGGCTTGTGAACCCCTGG  250

seq1  CTTCTGTGCCGGTGTTGGTCATTGCTGTCCTGTGACCAGTGGCTTGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGCCGGTGTTGGTCATTGCTGTCCTGTGACCAGTGGCTTGTGGG  300

seq1  AATCAGGTTGAGCAGACCAGGCTGTGCTCTGGGAAGCTTTGTTCTTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGTTGAGCAGACCAGGCTGTGCTCTGGGAAGCTTTGTTCTTGACT  350

seq1  CGTGTGGCACGCCACGCCGACCTCGAGGACTGACCCTGGGTATGCTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGGCACGCCACGCCGACCTCGAGGACTGACCCTGGGTATGCTGTGT  400

seq1  TGCTTCATTGCTGTGTGGCTCTTTCTGTAGCAGATCAGCAGAAAACCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATTGCTGTGTGGCTCTTTCTGTAGCAGATCAGCAGAAAACCAGG  450

seq1  TTAAGGAAATACCTTTGAAACCATGACCTGCCTACTACTGAGGGAATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAAATACCTTTGAAACCATGACCTGCCTACTACTGAGGGAATCAG  500

seq1  AGCAGGGAAACCAGACTCAGCAGGCTGGCCGGGTAAATCAGGTCAACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGAAACCAGACTCAGCAGGCTGGCCGGGTAAATCAGGTCAACCCA  550

seq1  GGCTGGCCCCCGTCGGCTGCCCATTTGAAAGCCTTACGCGTTTGTTTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCCCCGTCGGCTGCCCATTTGAAAGCCTTACGCGTTTGTTTGCA  600

seq1  ATGCTGGAATTGAACCCAGGGGCTCATACATGCTGGGCAAGTGTCCCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGAATTGAACCCAGGGGCTCATACATGCTGGGCAAGTGTCCCCCA  650

seq1  CTAGGGTACATCTCCAGACCTTTTTCCTTTTTATTTTGAGACAGGGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGTACATCTCCAGACCTTTTTCCTTTTTATTTTGAGACAGGGCCTC  700

seq1  ACCAACTTACCTTGGCTGATTTTTGAACTCACTCTATAGCCCAGGCAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTTACCTTGGCTGATTTTTGAACTCACTCTATAGCCCAGGCAGGC  750

seq1  CTTAAACTTGGGATCCTTCTGCCTCTGCCCTTTGCCCTCTGCCCTCTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACTTGGGATCCTTCTGCCTCTGCCCTTTGCCCTCTGCCCTCTGCC  800

seq1  CTCTGCCCTTTGCCCTCTGCCCTCTGCCCAGCTCGGCTTACAAATACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCCTTTGCCCTCTGCCCTCTGCCCAGCTCGGCTTACAAATACATA  850

seq1  GTGGCAGGCCCAGTTCTTTTGTCTTTGAAATGGAAAAGCTTCGTGTAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGCCCAGTTCTTTTGTCTTTGAAATGGAAAAGCTTCGTGTAGTG  900

seq1  TATGAAGGTGGCAGAATGGCACGATACCTTTCTGGGTCAGTTGGCCTACA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATGAAGGTGGCAGAATGGCACGATACCTTTCTGGGTCAGTTGGGCTACA  950

seq1  CTCTACGCTTGGTCACGTGATACGGTGTCTCTTGCTGATCAGCAGTCAAG  1000
      ||||||||||||||||||||||||||||  ||||||||||||||||| ||
seq2  CTCTACGCTTGGTCACGTGATACGGTGTTCCTTGCTGATCAGCAGTC-AG  999

seq1  GACATTGATTAATGAATGATCCTGTCTGTTGCTTGTTGCAAACCATGTGC  1050
      |||||||||||||| ||||| ||||||||||| ||||||||| |||||||
seq2  GACATTGATTAATG-ATGAT-CTGTCTGTTGC-TGTTGCAAA-CATGTGC  1045

seq1  CCTAGAGATACTGGACTTTAGTGATAGACCCCATGGTTGCCCAGAACCCT  1100
      |||| ||||||| ||||||| ||||  |  |||| | |||    || |||
seq2  CCTA-AGATACT-GACTTTAATGATTAA--CCAT-GCTGC----AAACCT  1086

seq1  CACTTCAGTCTAAAAATTTTAAAGTTCAGACTTCTACAATAATAGCCATT  1150
        | |||| |||||| ||   ||||   |||||| |||||||  ||||||
seq2  -TCCTCAG-CTAAAACTT---AAGT--CGACTTCCACAATAAATGCCATT  1129

seq1  TACCTTAATGATACCCTACCAA-TCAACC  1178
      |||||  |||  | |||||||| ||||||
seq2  TACCT--ATGTAATCCTACCAATTCAACC  1156