BAC Information

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BAC

Clone NameB6Ng01-331G03
Chromosome8 (Build37)5 (Build37)
Map Location 107,867,622 - 107,868,541130,277,865 - 130,278,192
singlet/doubletsingletsinglet
Overlap geneFhod1
Upstream geneCmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171
Downstream geneSlc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331G03.bB6Ng01-331G03.g
ACCGA117762GA117763
length919176
definitionB6Ng01-331G03.b B6Ng01-331G03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(107,867,622 - 107,868,541)(130,277,865 - 130,278,192)
sequence
gaattccatgccagccagggatatatgatgagacccaatctcaaaagaac
aaaatagcactgggggcagagggagtggagcaggtgggtccctgtgagtt
ccaggccacctaggcctccacaggtagatcctgtctcaaaaataaaaacc
aaacaaaagttagttaactgctgcaggcaaacacagccccaaatgaaacc
agggttagctggcccgtattttaggtgcgtgggtcttggatgtgttccag
aaaaccctgacagagaagtggacagagggccaggacctgcaatatcgtta
ctaaactgcttggattctgcaaataccccaaactggtcttcccagttcta
gtgagagaacacaaagtgcagttacacacacactctctctctctctctct
ctttctctctctctctctctcacacacacacacacacacacacacacaca
cacacgcgcacacacacacacactctctctctctctctctctcacacaca
cacacacacacacacacacacacacacacacacacaaacctatctactat
tacatgtctaccacttccaggacctaagctgtgggctctctcacctggct
atggcccaacacctttagtttagaaggaccggctgatggaacgtgcagac
tacaggcaggctgggaaacggccactccttgctcctgctccaattttcta
gtcttccaaagactcctgcagcaggtgcctgaagagctcattgacctaca
gataaacccccacaggcctcttaacccttagtggggggagagacatggtg
gcatatgcctataaagctagcattcatgagccctaggtagaagaacagga
tttgaggacaacttatgaacttgcctggaagaaatacattctaggtgggg
gagtaggtggatggggctg
aaagccacactcttgcttccatcctgggaaggtgaccactataaatcttt
tatttgcttgcttgtatatttttgagacagggtctcaggctatcatccca
gttagcctgaaattcactatgtaaattagaatagcttcaaaatggtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107867622_107868541
seq2: B6Ng01-331G03.b_43_961

seq1  GAATTCCATGCCAGCCAGGGATATATGATGAGACCCAATCTCAAAAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCCAGCCAGGGATATATGATGAGACCCAATCTCAAAAGAAC  50

seq1  AAAATAGCACTGGGGGCAGAGGGAGTGGAGCAGGTGGGTCCCTGTGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCACTGGGGGCAGAGGGAGTGGAGCAGGTGGGTCCCTGTGAGTT  100

seq1  CCAGGCCACCTAGGCCTCCACAGGTAGATCCTGTCTCAAAAATAAAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCACCTAGGCCTCCACAGGTAGATCCTGTCTCAAAAATAAAAACC  150

seq1  AAACAAAAGTTAGTTAACTGCTGCAGGCAAACACAGCCCCAAATGAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAGTTAGTTAACTGCTGCAGGCAAACACAGCCCCAAATGAAACC  200

seq1  AGGGTTAGCTGGCCCGTATTTTAGGTGCGTGGGTCTTGGATGTGTTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTAGCTGGCCCGTATTTTAGGTGCGTGGGTCTTGGATGTGTTCCAG  250

seq1  AAAACCCTGACAGAGAAGTGGACAGAGGGCCAGGACCTGCAATATCGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTGACAGAGAAGTGGACAGAGGGCCAGGACCTGCAATATCGTTA  300

seq1  CTAAACTGCTTGGATTCTGCAAATACCCCAAACTGGTCTTCCCAGTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTGCTTGGATTCTGCAAATACCCCAAACTGGTCTTCCCAGTTCTA  350

seq1  GTGAGAGAACACAAAGTGCAGTTACACACACACTCTCTCTCTCTCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAACACAAAGTGCAGTTACACACACACTCTCTCTCTCTCTCTCT  400

seq1  CTTTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACA  450

seq1  CACACGCGCACACACACACACACTCTCTCTCTCTCTCTCTCTCACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCGCACACACACACACACTCTCTCTCTCTCTCTCTCTCACACACA  500

seq1  CACACACACACACACACACACACACACACACACACAAACCTATCTACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACAAACCTATCTACTAT  550

seq1  TACATGTCTACCACTTCCAGGACCTAAGCTGTGGGCTCTCTCACCTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTCTACCACTTCCAGGACCTAAGCTGTGGGCTCTCTCACCTGGCT  600

seq1  ATGGCCCAACACCTTTAGTTTAGAAGGACCGGCTGATGGAACGTGCAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCAACACCTTTAGTTTAGAAGGACCGGCTGATGGAACGTGCAGAC  650

seq1  TACAGGCAGGCTGGGAAACGGCCACTCCTTGCTCCTGCTCCAATTTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCAGGCTGGGAAACGGCCACTCCTTGCTCCTGCTCCAATTTTCTA  700

seq1  GTCTTCCAAAGACTCCTGCAGCAGGGGCCTGAAGAGCTCATTGACCAACA  750
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  GTCTTCCAAAGACTCCTGCAGCAGGTGCCTGAAGAGCTCATTGACCTACA  750

seq1  GATAAA-CCCCACAGGCCTCTTAACCCTTAGTGGGGGG-GAGACATGGTG  798
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  GATAAACCCCCACAGGCCTCTTAACCCTTAGTGGGGGGAGAGACATGGTG  800

seq1  GCATATGCCTATAAAGCTAGCATTCATGAGCCCAAGGTAGGAAGAACAGG  848
      ||||||||||||||||||||||||||||||||| ||||| ||||||||||
seq2  GCATATGCCTATAAAGCTAGCATTCATGAGCCCTAGGTA-GAAGAACAGG  849

seq1  AATTTGAGGACAACTTATGAAACTTGCCTGGAAGAAA-ACATTCTAGGTG  897
       |||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  -ATTTGAGGACAACTTATG-AACTTGCCTGGAAGAAATACATTCTAGGTG  897

seq1  GGGGAGTAGGGTGGATGGGGCTG  920
      |||||||| ||||||||||||||
seq2  GGGGAGTA-GGTGGATGGGGCTG  919

seq1: chr5_130277865_130278192
seq2: B6Ng01-331G03.g_142_247 (reverse)

seq1  ATACACACACACACACACACACACACACACACCCCTAAATAAAAATAGCA  50
        |||||||||||||||||||||||||||||| ||       |  | | |
seq2  --ACACACACACACACACACACACACACACACACC-------ATTTTGAA  41

seq1  ACAATAATTTTTTAAAAATAGAGTTGCTGG------GCAGTGGTTGC---  91
       | ||  |  |||| | |  || || | ||      |   || | ||   
seq2  GCTATTCTAATTTACATAGTGAATTTCAGGCTAACTGGGATGATAGCCTG  91

seq1  ACACACTTTTAGTC-CCAACACTCAGGAGGCAGAAGCAGGCTGATCTCTT  140
      | || ||    ||| | ||                               
seq2  AGACCCT----GTCTCAAA-------------------------------  106

seq1  AGGTTCAAGGCCAACCTGGTCTACAGAGTGAGTTCCAGAATGGCCTGTCT  190
                                                        
seq2  --------------------------------------------------  106

seq1  CAATGCACACACACACACACAGAAAGAGAGAGAAATGGAGGGGGTGGGAA  240
                                                        
seq2  --------------------------------------------------  106

seq1  GAGGGGAAGAGAGTGAGTGTGTGTTTTAGAACATCTTTAGCTACATAGTT  290
                                                        
seq2  --------------------------------------------------  106

seq1  TGAGGCCCAGCCTAGGCTACACCAGACCCTGTCTCAAA  328
                                            
seq2  --------------------------------------  106