BAC Information

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BAC

Clone NameB6Ng01-331N05
Chromosome8 (Build37)
Map Location 51,212,588 - 51,377,301
singlet/doubletdoublet
Overlap genenone
Upstream gene4930555F03Rik, LOC100039919, EG667495
Downstream geneLOC100039954, LOC100039966, LOC667517
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331N05.bB6Ng01-331N05.g
ACCGA118094GA118095
length1,1141,083
definitionB6Ng01-331N05.b B6Ng01-331N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,212,588 - 51,213,682)(51,376,215 - 51,377,301)
sequence
gaattcatcttgacaattcacttacctgcttttacaactatacatttgga
gttataccctgtagatgaagggcagagttcttcatatgataatactaaac
taactacacttcatattactgctgccctttttagtgtacttgaagaactc
tggagcaactgagtttaagaacaaagggtctatttaaatgaatggattca
atgtgctgctaatacaaaaagacagttttcagaaatgattaagtcattac
agctccaccctctgacaacacatcaaccagttgacagaggttgaagggcc
acccttgtgccatttgtcctttttatcttctctcatataaaagcacagtt
ttccctctttgaaaagatcaagttatgggttccatctatgatgcagggag
aaactagtcactaggtttaggatgaatttctagaacagtgagagaggcat
ttctattagttataaattatccatggtaaaatattgtcataactgtaaaa
aacacacagagagacagagagagacagagagagagaatcttttgcagaga
ttgcttattagacatcaagactgctacttcttttgtagtaaggtgtaaca
acagattataaacagaagtcatgaataacacttacaatggtgacctattt
aagtaaaaattttatatgatcttctctgccttccttgatcatgtcaaagc
aggggtactttcaaaattcaaatgttgagtatgactgaagagcaataggg
aaagatcctctgtcccaattttgtagagaaaactacattttcaggcagga
agagttggggggaatatgtgggacaggtgatttttctatttttgtgaggt
cacaggaatttgcaaattttatctttgcttggagtttatcaataatgcaa
ggcaattgtttgctatcagtaacttaaagtgccatttggggaataaatat
ttgacattatccttatcaggaaatttaataaaggagatttggaaagatag
agacccagcttggagaatgggcagatatgttgatttatgcttgttggcca
tgatcatcgttgataaggaagataagacagcttccgagcttaaatacaga
caaagtcaggtgat

gaattctggttagagggacacatgcatttcatcttcacatttcattactt
tggtcatttaaattgaatgctcaaagaattgacttttcaacatttaaatt
ccccgggactgagtgacacggacttctccttacttgccacatttgggctt
cttctggagcctttcattgtttatctatattgattgggtgacttttgcca
tctatttgccggccttgaaaagatttaagtcttccataagcataatctgg
ctgcattctccccaaatttaattaggattattggtttcctgtcatatatt
tatgcattgtgtttcttgcccattcacacctgctcaaactcatttgaagg
cagggttaccctcataaaatacaaagattaaccttcactgtataatgtaa
tgaaaaatgtactaattttatggtacaaaaaatccgatacatttatttca
actttgcttttataacgttgagaattttgtgaatattaattactatgttc
caaacattgcagagaaaattttgtgaatacaataatggaatgtaaagttc
attaaaatgtacgtgattttcatctctttttgctgcctttgaaagggcac
acacacacaaacacacgggtgggagcaggcagacagacagactgacaaaa
acattacttttacatagttttagagtctccttattttccccagttcactg
catggtctcacagcactaaaattatttgcgaactttatcaaaatatttcc
agattttattagaataaagaaatagttatggtacagttattatgacctaa
actagataagattagaatgctaaaagactcacacagtcctttctgtgaga
agttggagatccgtggagcagtgactatgagatttattgacttgtcttgg
agatgtgctgatgacggcatttctaattttccaaaagttactaagtcact
gacctcctgctgtgctcaaatctggagacatagcagcagtgactatgagc
ctgcctttgcagtcctcggtacattcctgtctctgcatgcagtggaggct
ttctcttagagtgatgtgcagggtttaagaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_51212588_51213682
seq2: B6Ng01-331N05.b_49_1162

seq1  GAATTCATCTTGACAATTCACTTACCTGCTTTTACAACTATACATTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTGACAATTCACTTACCTGCTTTTACAACTATACATTTGGA  50

seq1  GTTATACCCTGTAGATGAAGGGCAGAGTTCTTCATATGATAATACTAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACCCTGTAGATGAAGGGCAGAGTTCTTCATATGATAATACTAAAC  100

seq1  TAACTACACTTCATATTACTGCTGCCCTTTTTAGTGTACTTGAAGAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACACTTCATATTACTGCTGCCCTTTTTAGTGTACTTGAAGAACTC  150

seq1  TGGAGCAACTGAGTTTAAGAACAAAGGGTCTATTTAAATGAATGGATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAACTGAGTTTAAGAACAAAGGGTCTATTTAAATGAATGGATTCA  200

seq1  ATGTGCTGCTAATACAAAAAGACAGTTTTCAGAAATGATTAAGTCATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTGCTAATACAAAAAGACAGTTTTCAGAAATGATTAAGTCATTAC  250

seq1  AGCTCCACCCTCTGACAACACATCAACCAGTTGACAGAGGTTGAAGGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACCCTCTGACAACACATCAACCAGTTGACAGAGGTTGAAGGGCC  300

seq1  ACCCTTGTGCCATTTGTCCTTTTTATCTTCTCTCATATAAAAGCACAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGTGCCATTTGTCCTTTTTATCTTCTCTCATATAAAAGCACAGTT  350

seq1  TTCCCTCTTTGAAAAGATCAAGTTATGGGTTCCATCTATGATGCAGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTTTGAAAAGATCAAGTTATGGGTTCCATCTATGATGCAGGGAG  400

seq1  AAACTAGTCACTAGGTTTAGGATGAATTTCTAGAACAGTGAGAGAGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGTCACTAGGTTTAGGATGAATTTCTAGAACAGTGAGAGAGGCAT  450

seq1  TTCTATTAGTTATAAATTATCCATGGTAAAATATTGTCATAACTGTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTAGTTATAAATTATCCATGGTAAAATATTGTCATAACTGTAAAA  500

seq1  AACACACAGAGAGACAGAGAGAGACAGAGAGAGAGAATCTTTTGCAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAGAGAGACAGAGAGAGACAGAGAGAGAGAATCTTTTGCAGAGA  550

seq1  TTGCTTATTAGACATCAAGACTGCTACTTCTTTTGTAGTAAGGTGTAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATTAGACATCAAGACTGCTACTTCTTTTGTAGTAAGGTGTAACA  600

seq1  ACAGATTATAAACAGAAGTCATGAATAACACTTACAATGGTGACCTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTATAAACAGAAGTCATGAATAACACTTACAATGGTGACCTATTT  650

seq1  AAGTAAAAATTTTATATGATCTTCTCTGCCTTCCTTGATCATGTCAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAAATTTTATATGATCTTCTCTGCCTTCCTTGATCATGTCAAAGC  700

seq1  AGGGGTACTTTCAAAATTCAAATGTTGAGTATGACTGAAGAGCAATAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTACTTTCAAAATTCAAATGTTGAGTATGACTGAAGAGCAATAGGG  750

seq1  AAAGATCCTCTGTCCCAATTTTGTAGAGAAAACTACATTTTCAGGCAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCCTCTGTCCCAATTTTGTAGAGAAAACTACATTTTCAGGCAGGA  800

seq1  AGAGTTGGGGGGAATATGTGGGACAGGTGATTTTTCTA-TTTTGTGAGGT  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAGTTGGGGGGAATATGTGGGACAGGTGATTTTTCTATTTTTGTGAGGT  850

seq1  CACAGGAATTTGCAAA-TTTATCTTTGCTTGGAG-TTATCAATAATGCAA  897
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  CACAGGAATTTGCAAATTTTATCTTTGCTTGGAGTTTATCAATAATGCAA  900

seq1  -GCAAT--GTTGCTATCAGTAACTTAAAGTGCCATT--GGGAATAAATAT  942
       |||||   |||||||||||||||||||||||||||  ||||||||||||
seq2  GGCAATTGTTTGCTATCAGTAACTTAAAGTGCCATTTGGGGAATAAATAT  950

seq1  TTGACATTAT-CTTATCAAGAAATTAAAT-AAGGAGA-TTGGAAAGATAG  989
      |||||||||| ||||||| |||||| ||| ||||||| ||||||||||||
seq2  TTGACATTATCCTTATCAGGAAATTTAATAAAGGAGATTTGGAAAGATAG  1000

seq1  AGACCCAGCTT-GAGAAT-GGCAGATATG-TGA--TAAGGCTGTGGGCCA  1034
      ||||||||||| |||||| |||||||||| |||  || |  ||| |||||
seq2  AGACCCAGCTTGGAGAATGGGCAGATATGTTGATTTATGCTTGTTGGCCA  1050

seq1  TGATCA-CG-TGATAAGAAGAATAAAGACAGCT--CCAGCTAAAATTACA  1080
      |||||| || ||||||| |  || |||||||||  | |||| ||| ||||
seq2  TGATCATCGTTGATAAGGAAGAT-AAGACAGCTTCCGAGCTTAAA-TACA  1098

seq1  GACAAAGTCA-GTGAT  1095
      |||||||||| |||||
seq2  GACAAAGTCAGGTGAT  1114


seq1: chr8_51376215_51377301
seq2: B6Ng01-331N05.g_69_1151 (reverse)

seq1  CTTTCTTAAAACCTGCACATCACTCTAAAGGAGAAAGCCTCACTTGCATG  50
      |||||||||| |||||||||||||||||  |||||||||||   ||||||
seq2  CTTTCTTAAACCCTGCACATCACTCTAA--GAGAAAGCCTCCACTGCATG  48

seq1  CCAGAGACAGGAATGTACCGAGGACTGCAAAGGCAAGGCTCATAGTCACT  100
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  -CAGAGACAGGAATGTACCGAGGACTGCAAAGGC-AGGCTCATAGTCACT  96

seq1  GCTGCTATGTCTCCAGATTTGAGCACAGCAGGAGGTCAGTGACTTAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTATGTCTCCAGATTTGAGCACAGCAGGAGGTCAGTGACTTAGTAA  146

seq1  CTTTTGGAAAATTAGAAATGCCGTCATCAGCACATCTCCAAGACAAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGAAAATTAGAAATGCCGTCATCAGCACATCTCCAAGACAAGTCA  196

seq1  ATAAATCTCATAGTCACTGCTCCACGGATCTCCAACTTCTCACAGAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTCATAGTCACTGCTCCACGGATCTCCAACTTCTCACAGAAAGG  246

seq1  ACTGTGTGAGTCTTTTAGCATTCTAATCTTATCTAGTTTAGGTCATAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGAGTCTTTTAGCATTCTAATCTTATCTAGTTTAGGTCATAATA  296

seq1  ACTGTACCATAACTATTTCTTTATTCTAATAAAATCTGGAAATATTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACCATAACTATTTCTTTATTCTAATAAAATCTGGAAATATTTTGA  346

seq1  TAAAGTTCGCAAATAATTTTAGTGCTGTGAGACCATGCAGTGAACTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTCGCAAATAATTTTAGTGCTGTGAGACCATGCAGTGAACTGGGG  396

seq1  AAAATAAGGAGACTCTAAAACTATGTAAAAGTAATGTTTTTGTCAGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGGAGACTCTAAAACTATGTAAAAGTAATGTTTTTGTCAGTCTG  446

seq1  TCTGTCTGCCTGCTCCCACCCGTGTGTTTGTGTGTGTGTGCCCTTTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGCCTGCTCCCACCCGTGTGTTTGTGTGTGTGTGCCCTTTCAAA  496

seq1  GGCAGCAAAAAGAGATGAAAATCACGTACATTTTAATGAACTTTACATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAAAAAGAGATGAAAATCACGTACATTTTAATGAACTTTACATTC  546

seq1  CATTATTGTATTCACAAAATTTTCTCTGCAATGTTTGGAACATAGTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGTATTCACAAAATTTTCTCTGCAATGTTTGGAACATAGTAATT  596

seq1  AATATTCACAAAATTCTCAACGTTATAAAAGCAAAGTTGAAATAAATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCACAAAATTCTCAACGTTATAAAAGCAAAGTTGAAATAAATGTA  646

seq1  TCGGATTTTTTGTACCATAAAATTAGTACATTTTTCATTACATTATACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGATTTTTTGTACCATAAAATTAGTACATTTTTCATTACATTATACAG  696

seq1  TGAAGGTTAATCTTTGTATTTTATGAGGGTAACCCTGCCTTCAAATGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTTAATCTTTGTATTTTATGAGGGTAACCCTGCCTTCAAATGAGT  746

seq1  TTGAGCAGGTGTGAATGGGCAAGAAACACAATGCATAAATATATGACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCAGGTGTGAATGGGCAAGAAACACAATGCATAAATATATGACAGG  796

seq1  AAACCAATAATCCTAATTAAATTTGGGGAGAATGCAGCCAGATTATGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAATAATCCTAATTAAATTTGGGGAGAATGCAGCCAGATTATGCTT  846

seq1  ATGGAAGACTTAAATCTTTTCAAGGCCGGCAAATAGATGGCAAAAGTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGACTTAAATCTTTTCAAGGCCGGCAAATAGATGGCAAAAGTCAC  896

seq1  CCAATCAATATAGATAAACAATGAAAGGCTCCAGAAGAAGCCCAAATGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAATATAGATAAACAATGAAAGGCTCCAGAAGAAGCCCAAATGTG  946

seq1  GCAAGTAAGGAGAAGTCCGTGTCACTCAGTCCCGGGGAATTTAAATGTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTAAGGAGAAGTCCGTGTCACTCAGTCCCGGGGAATTTAAATGTTG  996

seq1  AAAAGTCAATTCTTTGAGCATTCAATTTAAATGACCAAAGTAATGAAATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCAATTCTTTGAGCATTCAATTTAAATGACCAAAGTAATGAAATG  1046

seq1  TGAAGATGAAATGCATGTGTCCCTCTAACCAGAATTC  1087
      |||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGAAATGCATGTGTCCCTCTAACCAGAATTC  1083


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