BAC Information

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BAC

Clone NameB6Ng01-336E05
Chromosome8 (Build37)
Map Location 58,965,015 - 58,966,160
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948
Downstream geneBC088983, Fbxo8, LOC100040431, EG624433, LOC654355, LOC100040515, Hand2, Scrg1, Sap30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336E05.bB6Ng01-336E05.g
ACCGA121235GA121236
length1,1711,124
definitionB6Ng01-336E05.b B6Ng01-336E05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatagaccatgtagagactgccatagccaggatccaccccataatca
gcatccaaacgctgacaccattgcatacactagcaagattttattgaaag
gacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaaca
cagaagtggatgctcacagtcagctaatggatggatcatagggctcccaa
tggagagctagagaagtagccaggagctaaagggatctgcaccctatagg
tggacacattatgagctaccagtaccccggagctcttgactctagctgca
tatatatcaaagatggcctagtcggcatcactgaaggagaggcccattgg
acttgcaacttatatgccagtaaggcaatacaggcgaatggatggtgtgg
cagcgggaatgtgtggggcgt
gaattcagcttgtgcttgcttgactaaaaggtgccagttcaaggtgctcg
gtgagtggactttaacagagacacaggaacaactgggcaggggagagaat
cttcgtgcaagcagcataggagagttaaatgtaagaaaaatagcaggagg
taaggcctttaggatttctgatccagggttattaaaaatgacaccaccca
gggctgaaaaacatatttcagtgaaatcctgactctgatccctggtgcta
agcaaactggtggcaacaatgcctttagtctcagcattttggagatggga
gcaagaagatcagaagtccaaggccaggtgggaactttcgtgatcttgcc
taacaacacaacacaacacaaaacaaaacaaaacagagcctccaagtaaa
gacggcttgaaaagtatcatacttacatttttgattgactagacccaaaa
tgagagtgtgtgctgaggaaacccttttaaggaagcaggacgacaagcta
cacaaccatggggcatttaaaaaaaaaatccaccattctggaggaaagaa
gtgtacctaggatatctaaggagctctcagataacggtttaaaaagaaat
ggccagaagacagacatttcccaaagcaaaaacatggatagcaataaaca
tgtaacataatgttcatcattgcgagtcattaggggaaagccatttaaaa
atgcctcagtcagggtcatcattccttgctattgagaatggccgagacag
aaccatagaaccctggcaaaattcactgccagcaggaacccaaacctgaa
taagcactttcaaaatagtttggaattgtcatcatgggaaaatatgggtt
gtttctgtcacatgctgtgactctagccattaagagtaaagtcatttaaa
gaaacaacataaaaatagtacaatggaaatatgctgttaacatattcact
caatgtttcgttgcaagagaactgacattattgtagtcattatatacaac
aataaatgtatagtttattttattagatttaatgtccatgatttctgtaa
aatataagtatttagggcaacttaagtgttgtttcagtttagtttaaaaa
tcagatgccactagatgcagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_58965015_58966160
seq2: B6Ng01-336E05.g_63_1186 (reverse)

seq1  TCTTCTGCCATCTAGTGGCCATCTGAATTTTTAAACTAAAACCTGAAACA  50
      ||||||| |||||||||| |||||| ||||||||||||||  ||||||||
seq2  TCTTCTG-CATCTAGTGG-CATCTG-ATTTTTAAACTAAA--CTGAAACA  45

seq1  AACCACTTTAAGTTTGGCCCTAAAATACTTTATAATTTTTAACCAGAAAT  100
      |  ||| |||||||  ||||| |||||| |||||  |||||  |||||||
seq2  A--CAC-TTAAGTT--GCCCT-AAATAC-TTATA--TTTTA--CAGAAAT  84

seq1  CATTGGACATTAAAATTCTAATAAAATAAACTATACATTTA-TGTTGTAT  149
      || |||||||||||  ||||||||||||||||||||||||| ||||||||
seq2  CA-TGGACATTAAA--TCTAATAAAATAAACTATACATTTATTGTTGTAT  131

seq1  ATAATGACTACAAATAATGTCAGTTTCTTCTTTGCAACGAAACATTGAGT  199
      ||||||||||| ||||||||||| ||||   |||||||||||||||||||
seq2  ATAATGACTAC-AATAATGTCAG-TTCT--CTTGCAACGAAACATTGAGT  177

seq1  GAATATGTTAACAGCATATTTCCATTGTACTATTTTTATGTTGTTTCTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGTTAACAGCATATTTCCATTGTACTATTTTTATGTTGTTTCTTT  227

seq1  AAATGACTTTACTCTTAATGGCTAGAGTCACAGCATGTGACAGAAACAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTTTACTCTTAATGGCTAGAGTCACAGCATGTGACAGAAACAAC  277

seq1  CCATATTTTCCCATGATGACAATTCCAAACTATTTTGAAAGTGCTTATTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTTCCCATGATGACAATTCCAAACTATTTTGAAAGTGCTTATTC  327

seq1  AGGTTTGGGTTCCTGCTGGCAGTGAATTTTGCCAGGGTTCTATGGTTCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGGGTTCCTGCTGGCAGTGAATTTTGCCAGGGTTCTATGGTTCTG  377

seq1  TCTCGGCCATTCTCAATAGCAAGGAATGATGACCCTGACTGAGGCATTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGCCATTCTCAATAGCAAGGAATGATGACCCTGACTGAGGCATTTT  427

seq1  TAAATGGCTTTCCCCTAATGACTCGCAATGATGAACATTATGTTACATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGCTTTCCCCTAATGACTCGCAATGATGAACATTATGTTACATGT  477

seq1  TTATTGCTATCCATGTTTTTGCTTTGGGAAATGTCTGTCTTCTGGCCATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCTATCCATGTTTTTGCTTTGGGAAATGTCTGTCTTCTGGCCATT  527

seq1  TCTTTTTAAACCGTTATCTGAGAGCTCCTTAGATATCCTAGGTACACTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTAAACCGTTATCTGAGAGCTCCTTAGATATCCTAGGTACACTTC  577

seq1  TTTCCTCCAGAATGGTGGATTTTTTTTTTAAATGCCCCATGGTTGTGTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCAGAATGGTGGATTTTTTTTTTAAATGCCCCATGGTTGTGTAG  627

seq1  CTTGTCGTCCTGCTTCCTTAAAAGGGTTTCCTCAGCACACACTCTCATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCGTCCTGCTTCCTTAAAAGGGTTTCCTCAGCACACACTCTCATTT  677

seq1  TGGGTCTAGTCAATCAAAAATGTAAGTATGATACTTTTCAAGCCGTCTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTAGTCAATCAAAAATGTAAGTATGATACTTTTCAAGCCGTCTTT  727

seq1  ACTTGGAGGCTCTGTTTTGTTTTGTTTTGTGTTGTGTTGTGTTGTTAGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAGGCTCTGTTTTGTTTTGTTTTGTGTTGTGTTGTGTTGTTAGGC  777

seq1  AAGATCACGAAAGTTCCCACCTGGCCTTGGACTTCTGATCTTCTTGCTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCACGAAAGTTCCCACCTGGCCTTGGACTTCTGATCTTCTTGCTCC  827

seq1  CATCTCCAAAATGCTGAGACTAAAGGCATTGTTGCCACCAGTTTGCTTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCAAAATGCTGAGACTAAAGGCATTGTTGCCACCAGTTTGCTTAG  877

seq1  CACCAGGGATCAGAGTCAGGATTTCACTGAAATATGTTTTTCAGCCCTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGGATCAGAGTCAGGATTTCACTGAAATATGTTTTTCAGCCCTGG  927

seq1  GTGGTGTCATTTTTAATAACCCTGGATCAGAAATCCTAAAGGCCTTACCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTCATTTTTAATAACCCTGGATCAGAAATCCTAAAGGCCTTACCT  977

seq1  CCTGCTATTTTTCTTACATTTAACTCTCCTATGCTGCTTGCACGAAGATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTATTTTTCTTACATTTAACTCTCCTATGCTGCTTGCACGAAGATT  1027

seq1  CTCTCCCCTGCCCAGTTGTTCCTGTGTCTCTGTTAAAGTCCACTCACCGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCTGCCCAGTTGTTCCTGTGTCTCTGTTAAAGTCCACTCACCGA  1077

seq1  GCACCTTGAACTGGCACCTTTTAGTCAAGCAAGCACAAGCTGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTGAACTGGCACCTTTTAGTCAAGCAAGCACAAGCTGAATTC  1124