BAC Information

Click to search

BAC

Clone NameB6Ng01-336H10
Chromosome8 (Build37)
Map Location 24,760,683 - 24,903,177
singlet/doubletdoublet
Overlap geneLOC100040931, Zmat4
Upstream genePolb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1
Downstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336H10.bB6Ng01-336H10.g
ACCGA121377GA121378
length1,0231,195
definitionB6Ng01-336H10.b B6Ng01-336H10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,760,683 - 24,761,550)(24,901,981 - 24,903,177)
sequence
gaattcatctgaggtccactttttactagttatgtttgagttttggcaaa
atgtgttttcttttgctcattttcttaccagttaccggtctcttattgat
ttataagaaatctacatgggtctcatgcattagtttggaccactagttgc
aaatgccactgtccctttctttgtcttctgatttgctggttgctctgttt
ctcactcagcacagattttcttcaggtgaaatcacatgactgggtatgtc
tctttgttgttcctggattttgtttcatatttacaagtgtctccattaaa
tgccccactcaaatatcttcacatatgttgtgtctgttcaatattttcct
catcacacttaatttttttgccattttattgaaaatagattttccctcac
atgatttattctgattgtcctttccttccattcctcccagtgcctcccca
cctcccttcccctccagatccactgtttttctgtctcactataaaacaaa
caggcttctatgtgataatataatatgatataacaaacaaaacctaacac
attgaaataagacagaatgaaagaagaaaaagagcccaagaaaaggcaca
agaaacagacacagagacttactcacatattcaagaatcccataaagaca
ctaatctagaagccagaatatatacctaaactaactgtaggagagagaga
gagagagagagagagagagagagagagagagagagagaacacaaaataaa
aaataatgaaatagaaagccgtttttaaagggacaagcaccctccagaga
gaccgtagagtctgttttctgttggcatctactcctgggcatacagccta
tcctaagagtggtttgtttcccaagtgggactcccttagagaaagacaaa
gtttcatttgcaagtggctatcgattggagagatagcctttgggtcagag
atgggtgtgtgtccactctacacagggcccatctggtgcagacccatgca
ggtcctgtgcatgctgctcagtg
gaattcccacgttcatcgtctcatttcatcctcagatctcagttttgagg
ctggcaggagaggtgcgatcttaaataatcatcatgatccattcttgatt
tccaagataagtctttcaccatcttgttccgacatagccatctaactaaa
cctcctccagaaaccacccgaagagagccaagaacagcaaagaaacagag
cctagaatggactgataattatagaactgtgattctcacaggccgccatc
tctgagatattttgagacaacaaacatcaagagtctaactcactggggtt
tagagaattgttgtccagtgggagacagggattccctccaaagcatgaaa
gaaatgctgtcccggtaggaacccatcttaggggttttactactgtgaac
agacaccttgacccaggccactcttataagggcaatatttaattggggct
ggcttacaggttcagaggttcagtccattatcatcaaggccggagtatgg
cagcatctaggaatgcatggtacaagaggagctgagagtttcacctcttg
ttctgaaggcagttaagactggcttccaggtagctaggaaagtgtctcaa
agcccatgcccataatgagacaattcctctatcaaggctatacctcctaa
tagtgccactccttggaccaagcatattcaaaccaccacagatcccattt
caggactcatgacttctgggacctgcatgtgtccaggaaaaccacaagag
ttacagactgctaagagaatagtcacctcctagatgtctgtagcttctgc
tcttaccatataagtaagctgggcccagaaccttcctacactgagtaagt
gtgcatgttgggtcagataagcaggaagaggaaagcctgaaggaaggctt
tgctgtctcagaaaaggccagagatgcctagaccctccttacaggtcccc
atcatgggctctgagctactgatagggtctgcagtactcctagaactgaa
actggactggagatcctgacgaatcccagtagcctagctgatgccacata
cagagcatgtagtagaccttttatggctctgcatgccaagggtgaggggc
cacacacagcaactaacatatgggtgtgaaggaaaggttcggtctgctgg
gaatgcaaccagcctttgccttgtgccaagcgagtcaattgcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_24760683_24761550
seq2: B6Ng01-336H10.b_47_915

seq1  GAATTCATCTGAGGTCCACTTTTTACTAGTTATGTTTGAGTTTTGGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGAGGTCCACTTTTTACTAGTTATGTTTGAGTTTTGGCAAA  50

seq1  ATGTGTTTTCTTTTGCTCATTTTCTTACCAGTTACCGGTCTCTTATTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTTCTTTTGCTCATTTTCTTACCAGTTACCGGTCTCTTATTGAT  100

seq1  TTATAAGAAATCTACATGGGTCTCATGCATTAGTTTGGACCACTAGTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGAAATCTACATGGGTCTCATGCATTAGTTTGGACCACTAGTTGC  150

seq1  AAATGCCACTGTCCCTTTCTTTGTCTTCTGATTTGCTGGTTGCTCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCACTGTCCCTTTCTTTGTCTTCTGATTTGCTGGTTGCTCTGTTT  200

seq1  CTCACTCAGCACAGATTTTCTTCAGGTGAAATCACATGACTGGGTATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCAGCACAGATTTTCTTCAGGTGAAATCACATGACTGGGTATGTC  250

seq1  TCTTTGTTGTTCCTGGATTTTGTTTCATATTTACAAGTGTCTCCATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTGTTCCTGGATTTTGTTTCATATTTACAAGTGTCTCCATTAAA  300

seq1  TGCCCCACTCAAATATCTTCACATATGTTGTGTCTGTTCAATATTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCACTCAAATATCTTCACATATGTTGTGTCTGTTCAATATTTTCCT  350

seq1  CATCACACTTAATTTTTTTGCCATTTTATTGAAAATAGATTTTCCCTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACACTTAATTTTTTTGCCATTTTATTGAAAATAGATTTTCCCTCAC  400

seq1  ATGATTTATTCTGATTGTCCTTTCCTTCCATTCCTCCCAGTGCCTCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTATTCTGATTGTCCTTTCCTTCCATTCCTCCCAGTGCCTCCCCA  450

seq1  CCTCCCTTCCCCTCCAGATCCACTGTTTTTCTGTCTCACTATAAAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTCCCCTCCAGATCCACTGTTTTTCTGTCTCACTATAAAACAAA  500

seq1  CAGGCTTCTATGTGATAATATAATATGATATAACAAACAAAACCTAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTCTATGTGATAATATAATATGATATAACAAACAAAACCTAACAC  550

seq1  ATTGAAATAAGACAGAATGAAAGAAGAAAAAGAGCCCAAGAAAAGGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATAAGACAGAATGAAAGAAGAAAAAGAGCCCAAGAAAAGGCACA  600

seq1  AGAAACAGACACAGAGACTTACTCACATATTCAAGAATCCCATAAAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGACACAGAGACTTACTCACATATTCAAGAATCCCATAAAGACA  650

seq1  CTAATCTAGAAGCCAGAATATATACCTAAACTAACTGTAGGAGAGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTAGAAGCCAGAATATATACCTAAACTAACTGTAGGAGAGAGAGA  700

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACACAAAAT-AA  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACACAAAATAAA  750

seq1  AAATAATGAAATAGAAAGCCGTTTTTAAAGGGACAAGCACCCTCCAGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGAAATAGAAAGCCGTTTTTAAAGGGACAAGCACCCTCCAGAGA  800

seq1  GACCGTAGAGTCTGTTTTCTGTTGGCATCTACTCCTGGGCATACAGCCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGTAGAGTCTGTTTTCTGTTGGCATCTACTCCTGGGCATACAGCCTA  850

seq1  TCCTAAGAGTGGTTTGTTT  868
      |||||||||||||||||||
seq2  TCCTAAGAGTGGTTTGTTT  869

seq1: chr8_24901981_24903177
seq2: B6Ng01-336H10.g_70_1264 (reverse)

seq1  CAGGCAATTGACT-GCTTGGCACAA-GCAAAGCCCTGGGTTCCATCCCCA  48
      ||||||||||||| ||||||||||| |||||| |   |||| ||| ||||
seq2  CAGGCAATTGACTCGCTTGGCACAAGGCAAAGGC--TGGTTGCATTCCCA  48

seq1  GCAGCACGGGAACTTTCCTTCACA-CCATATGGTAGTTTGCTGTGT---G  94
      |||| || | | |||||||||||| ||||||| ||| |||||||||   |
seq2  GCAG-ACCGAACCTTTCCTTCACACCCATATGTTAG-TTGCTGTGTGTGG  96

seq1  CCACTCACCCCTGGCATGCCAGAGGCCAT-AAAGGTCTACTACATGCTTC  143
      || ||||||| ||||||| |||| ||||| ||||||||||||||||| ||
seq2  CCCCTCACCCTTGGCATG-CAGA-GCCATAAAAGGTCTACTACATGC-TC  143

seq1  TGTATGT-GCATCAGCTAGGCTACTGGGATTCGTTCAGGATCTTCCAGTC  192
      ||||||| ||||||||||||||||||||||||| |||||||| |||||||
seq2  TGTATGTGGCATCAGCTAGGCTACTGGGATTCG-TCAGGATC-TCCAGTC  191

seq1  CAGTTTCAGTTCTAGGAGTACCTGCAGACCCTATCAGTAGCTCAGAGCCC  242
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAGTTTCAGTTCTAGGAGTA-CTGCAGACCCTATCAGTAGCTCAGAGCCC  240

seq1  ATGATGGGGACCTGTAAGGAGGGTCTAGGCATCTCTGGCCTTTTCTGAGA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGGACCTGTAAGGAGGGTCTAGGCATCTCTGGCCTTTTCTGAGA  290

seq1  CAGCAAAGCCTTCCTTCAGGCTTTCCTCTTCCTGCTTATCTGACCCAACA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGCCTTCCTTCAGGCTTTCCTCTTCCTGCTTATCTGACCCAACA  340

seq1  TGCACACTTACTCAGTGTAGGAAGGTTCTGGGCCCAGCTTACTTATATGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACTTACTCAGTGTAGGAAGGTTCTGGGCCCAGCTTACTTATATGG  390

seq1  TAAGAGCAGAAGCTACAGACATCTAGGAGGTGACTATTCTCTTAGCAGTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCAGAAGCTACAGACATCTAGGAGGTGACTATTCTCTTAGCAGTC  440

seq1  TGTAACTCTTGTGGTTTTCCTGGACACATGCAGGTCCCAGAAGTCATGAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTCTTGTGGTTTTCCTGGACACATGCAGGTCCCAGAAGTCATGAG  490

seq1  TCCTGAAATGGGATCTGTGGTGGTTTGAATATGCTTGGTCCAAGGAGTGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAATGGGATCTGTGGTGGTTTGAATATGCTTGGTCCAAGGAGTGG  540

seq1  CACTATTAGGAGGTATAGCCTTGATAGAGGAATTGTCTCATTATGGGCAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTAGGAGGTATAGCCTTGATAGAGGAATTGTCTCATTATGGGCAT  590

seq1  GGGCTTTGAGACACTTTCCTAGCTACCTGGAAGCCAGTCTTAACTGCCTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTGAGACACTTTCCTAGCTACCTGGAAGCCAGTCTTAACTGCCTT  640

seq1  CAGAACAAGAGGTGAAACTCTCAGCTCCTCTTGTACCATGCATTCCTAGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAAGAGGTGAAACTCTCAGCTCCTCTTGTACCATGCATTCCTAGA  690

seq1  TGCTGCCATACTCCGGCCTTGATGATAATGGACTGAACCTCTGAACCTGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCATACTCCGGCCTTGATGATAATGGACTGAACCTCTGAACCTGT  740

seq1  AAGCCAGCCCCAATTAAATATTGCCCTTATAAGAGTGGCCTGGGTCAAGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGCCCCAATTAAATATTGCCCTTATAAGAGTGGCCTGGGTCAAGG  790

seq1  TGTCTGTTCACAGTAGTAAAACCCCTAAGATGGGTTCCTACCGGGACAGC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTCACAGTAGTAAAACCCCTAAGATGGGTTCCTACCGGGACAGC  840

seq1  ATTTCTTTCATGCTTTGGAGGGAATCCCTGTCTCCCACTGGACAACAATT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTCATGCTTTGGAGGGAATCCCTGTCTCCCACTGGACAACAATT  890

seq1  CTCTAAACCCCAGTGAGTTAGACTCTTGATGTTTGTTGTCTCAAAATATC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAACCCCAGTGAGTTAGACTCTTGATGTTTGTTGTCTCAAAATATC  940

seq1  TCAGAGATGGCGGCCTGTGAGAATCACAGTTCTATAATTATCAGTCCATT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATGGCGGCCTGTGAGAATCACAGTTCTATAATTATCAGTCCATT  990

seq1  CTAGGCTCTGTTTCTTTGCTGTTCTTGGCTCTCTTCGGGTGGTTTCTGGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTCTGTTTCTTTGCTGTTCTTGGCTCTCTTCGGGTGGTTTCTGGA  1040

seq1  GGAGGTTTAGTTAGATGGCTATGTCGGAACAAGATGGTGAAAGACTTATC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTTAGTTAGATGGCTATGTCGGAACAAGATGGTGAAAGACTTATC  1090

seq1  TTGGAAATCAAGAATGGATCATGATGATTATTTAAGATCGCACCTCTCCT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATCAAGAATGGATCATGATGATTATTTAAGATCGCACCTCTCCT  1140

seq1  GCCAGCCTCAAAACTGAGATCTGAGGATGAAATGAGACGATGAACGTGGG  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTCAAAACTGAGATCTGAGGATGAAATGAGACGATGAACGTGGG  1190

seq1  AATTC  1197
      |||||
seq2  AATTC  1195