BAC Information

Click to search

BAC

Clone NameB6Ng01-337F19
Chromosome8 (Build37)
Map Location 54,819,607 - 54,820,230
singlet/doubletsinglet
Overlap geneLOC100040107
Upstream geneLOC676688, Aga, Neil3
Downstream geneVegfc, Spcs3, Asb5, Spata4, Wdr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337F19.bB6Ng01-337F19.g
ACCGA122012GA122013
length1,046438
definitionB6Ng01-337F19.b B6Ng01-337F19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctggcaattaatgagtatatctatcccaattatacatcctggaac
tggggaaatgatcacaggatgtgttcggggacctactggacctactgtga
gtcggttatcagtcaaaactccattaatcacctgtcccccataagcccct
actttaactgtaggaccacaatgtttcttgggatctcctgggatcagtgt
cagttgagaaccagtatccaatagaccccggaatttctgattatttcctt
tctcccagtgtagagttacccttgtaaaaaggctgtaggtccctctgggg
aagaactggagaaaggctaacagcaaaacttttaggtgtcttatcaagac
ttttcctcaggggaacctggccaccccttcattcaaggggttctgggcct
gcaaactggctcaagtctggaaactgattcactggccggattaccttttg
ccctaatccaatgtagcctttctttcactagtttgagaacttttattctt
atacagatcaaaaatcaaacagatatgcagtatctttcctatctatttct
tgcctggaaacaccatgattgattagccagtaccaaaggtccaagcgagt
catgccattataaatttcacctctcctgtgctgaccattatggggtatga
cattataaacattgttttgtttatgctgtccattataataactatgatca
ccttgtctctggtggttcaatgctgccacctggctcttgctaccttgggg
cccaattaaacccattgaatttaattcatctaattgagcagcagcatctt
caaccctaaaggtctggcacaaggaaaagggcaagaacaaaacccttcaa
atgtgctggtgcccctctcaccagtttgcatctcataggactggtgaaga
gcatatcttctagatgttctcactttcttccaatttctttaacgtcaatt
ggtatttaagttgagacactaaaagaatgttcctaaggacattgcctcat
tgtaaatttacaaatgtatttgcgattgtacagatagtatatcatg

ctaatctttcaacaacttttatcatgaatgggtgttggattttgcccgat
gctttctcagcatctaatgaggtttttgtctttgagtttgtttatattgt
ggattatgttgatgaatatccatatgttgaaccatccctgcatcccagga
atgaagcctactttatcatgacggatgaccgttttgatgtgttcttggat
ttggtttgtgagaattttattgagtatttttgcatcggtattcataagga
aatttggtctgaagtcctctttgtatggtttaggtatcagagtaattgtg
gcttcatagaaagaattgggtaaagtatcttctgtttctatttcgtggaa
tagtttaagagtattggtattcggtcttctttgaaagtctgatagaacta
tgcaattaacctgtctggtattgtggttttggggtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_54819607_54820230
seq2: B6Ng01-337F19.b_473_1092

seq1  ATTCACTGGCCGGATTACCTTTTGCCCTAATCCAATGTAGCCTTTCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGGCCGGATTACCTTTTGCCCTAATCCAATGTAGCCTTTCTTTC  50

seq1  ACTAGTTTGAGAACTTTTATTCTTATACAGATCAAAAATCAAACAGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTTGAGAACTTTTATTCTTATACAGATCAAAAATCAAACAGATAT  100

seq1  GCAGTATCTTTCCTATCTATTTCTTGCCTGGAAACACCATGATTGATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATCTTTCCTATCTATTTCTTGCCTGGAAACACCATGATTGATTAG  150

seq1  CCAGTACCAAAGGTCCAAGCGAGTCATGCCATTATAAATTTCACCTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACCAAAGGTCCAAGCGAGTCATGCCATTATAAATTTCACCTCTCC  200

seq1  TGTGCTGACCATTATGGGGTATGACATTATAAACATTGTTTTGTTTATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGACCATTATGGGGTATGACATTATAAACATTGTTTTGTTTATGC  250

seq1  TGTCCATTATAATAACTATGATCACCTTGTCTCTGGTGGTTCAATGCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATTATAATAACTATGATCACCTTGTCTCTGGTGGTTCAATGCTGC  300

seq1  CACCTGGCTCTTGCTACCTTGGGGCCCAATTAAACCCATTGAATTTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGCTCTTGCTACCTTGGGGCCCAATTAAACCCATTGAATTTAATT  350

seq1  CATCTAATTGAGCAGCAGCATCTTCAACCCT-AAGGTCTGGCACAAGGAA  399
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATCTAATTGAGCAGCAGCATCTTCAACCCTAAAGGTCTGGCACAAGGAA  400

seq1  AAGGGCAAGAACAAAACCCTTCAAATGTGCTGGTGCCCCTCTCACCAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAAGAACAAAACCCTTCAAATGTGCTGGTGCCCCTCTCACCAGTT  450

seq1  TGCATCTCATAGGACTGGTGAAGAGCATATCTTCTAGATGTTCTCACTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTCATAGGACTGGTGAAGAGCATATCTTCTAGATGTTCTCACTTT  500

seq1  CTTCCAATTTCTTTAACGTCAATTGGTATTTAAGTTGAGACACTAAAAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAATTTCTTTAACGTCAATTGGTATTTAAGTTGAGACACTAAAAGA  550

seq1  ATGTTCCTAAGGGACATTGCCCCATTGTAAATTTACAAATGTATTTGCGA  599
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  ATGTTCCTAA-GGACATTGCCTCATTGTAAATTTACAAATGTATTTGCGA  599

seq1  TTGTACAAGGAATAGTTATATCATG  624
      |||||||    |||| |||||||||
seq2  TTGTACA---GATAG-TATATCATG  620


| Home | SequenceCutter | Blast | Download |