BAC Information

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BAC

Clone NameB6Ng01-339E22
Chromosome8 (Build37)
Map Location 28,881,405 - 28,987,643
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp703, Erlin2, Prosc, Gpr124, Brf2, Rab11fip1, Got1l1, Adrb3, Eif4ebp1, LOC732482, Tex24, Chrnb3, Chrna6, 4921537P18Rik, Gm1698
Downstream geneEG666422, LOC666430, EG666446, LOC100042598, Unc5d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339E22.bB6Ng01-339E22.g
ACCGA123338GA123339
length986951
definitionB6Ng01-339E22.b B6Ng01-339E22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,986,657 - 28,987,643)(28,881,405 - 28,882,319)
sequence
gaattctgccctggactggcaggtaatctaggaaaggtctcatgaataca
ccgtgctcctgcttctgttctgcctgcttgggtttcgggatgctcggtac
cgcgcgagtgtgggaggacaatgttaagtacagttaagtacagctgatcc
tcattcatgatttctgtgatttgaagtgcaatttccctgtgggagcatgg
cgcaagggcatgctcctgcaaaagtgatttttgacttctttccacccact
catgtcactcgtgtcatggtcagccttcctaaggccccctttgtaccagt
aagaccaagtaccatcccttctaatgggacattagaagcaataacacaat
atctttgacttcatgttccagtgagaaggcatccagctgcttttctgtgc
caggctttcctgcctctctctctttatgtctttaccgtccttctctcctg
gagtttatcattttcctattgttgttatccagatagagtatttaacatta
ctttgagctccagatgaaaggaagatgattcatgacaagccaggatctgt
aaaacatgttcgactttcgataaaaggatgtcatgaaaggaaatggtgcc
tgactctgtctagtaagaaaattaatagccaggcctggcatggaacatga
ggtcatctctcctcccaagatctctactgctctcacggcctgggaatggt
gtcggggagggaatcaatgctccaggaaccatactcatcacaccagcagt
ttcattcgtggagtagaagacccttggaaagtggtgtcgtttagacataa
gtgcattcatctaccagggatccactttgtggctgccagttgccttcctc
ggcgactttcgctgttccactcttctgctgtctccagctgctactttatc
tggattccacctgacattctaataagcgcctcggggctgcaagtatgtag
gcgaacagattccatccactcactggggtttaatga
gaattcagacgtttgacctttgcagtctgtgtggaaggataattttgcta
aggtaccagatgggagaaaattcagcatttgtggggttggaggtggtacc
ttggctctctaattttaaacccgagatcaaccccaagccacccactacca
tcaaagtgagaggagggagggagttgtcatcggtagaagggagccattta
tgtttagcgttatctaaaactttcagactattgcgtcttctgatctctcc
actttgcaatatattgagtaaaaaaaaatgtgttttaaaaatgtaacatc
tggttatattaattttatttatatttataatatatttataaaataaaaca
tttataaaaatatttaagaatataaaataaatatttataaaaatattttt
tatttatttggttttaagttgtatttaaatttttattttttatatgtgca
tgttcttcctgtatgagagtatgtacagagtgtgtgtgcagtgcccacag
aagtcagaagagacattggatttcttggaactgcagcagtcagggcactt
aactgctgagccatctctctagccataataatctctttaaaaaccaggga
ccccttaccctttagaccactaagtgtggttgctgtgcctggatttgagt
cttgtcactgttccctcttccaagaatgaggctttggtttcatgtctgcc
ctgaattacttttttaaattttggactgcatcttctatcctgcaccctga
aagttctgtctttttctgtcagattaagtcttgcttaacttcttattact
tcagcaatttacctctccaggatagctttctgcaaatcagtggtcagggg
ttctattcttgcatgttatttcagtgcattctcccctttctcgggctttt
gtgcattgcccatcagtgtaggtgattgttgcttgttaattactgcttaa
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_28986657_28987643
seq2: B6Ng01-339E22.b_45_1030 (reverse)

seq1  TCATTAAAACCCCACGTGAGT-GATGGAAACTGTTCGCTAACAATACCTG  49
      ||||| |||||||| |||||| ||||||| ||||||||  || |||| ||
seq2  TCATT-AAACCCCA-GTGAGTGGATGGAATCTGTTCGCCTAC-ATACTTG  47

seq1  CAGCCCCGA-GCGCTAATTAGAAATGGTCAGGTTGGAAT-CAGATAAAGT  97
      ||||||||| ||||| |||||||   |||||| |||||| ||||||||||
seq2  CAGCCCCGAGGCGCTTATTAGAA--TGTCAGG-TGGAATCCAGATAAAGT  94

seq1  AGCAGGCTGGAGACAGCAGAAAGAGTGG-ACAGCGGAAGTCGCCGAGG-A  145
      |||| |||||||||||||| |||||||| |||||| |||||||||||| |
seq2  AGCA-GCTGGAGACAGCAG-AAGAGTGGAACAGCGAAAGTCGCCGAGGAA  142

seq1  GGCAAACCTGGCAG-CACAAAGT-GATCCCTGGTAGATGGATGCAC-TAT  192
      |||||  ||||||| |||||||| ||||||||||||||| |||||| |||
seq2  GGCAA--CTGGCAGCCACAAAGTGGATCCCTGGTAGATGAATGCACTTAT  190

seq1  GTCTAAAACGACACCACTTTCCAAGGGTCTTCTACTCCACGAATGAAACT  242
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCT-AAACGACACCACTTTCCAAGGGTCTTCTACTCCACGAATGAAACT  239

seq1  GCTGGTGTGATG-GTATGGTTCCTGG-GCATTGATTCCCTCCCCGACACC  290
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  GCTGGTGTGATGAGTATGGTTCCTGGAGCATTGATTCCCTCCCCGACACC  289

seq1  ATTCCCAGGCCGTGAGAGCAGTAGAGATCTTGGGAGGAGAGATGACCTCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGGCCGTGAGAGCAGTAGAGATCTTGGGAGGAGAGATGACCTCA  339

seq1  TGTTCCATGCCAGGCCTGGCTATTAATTTTCTTACTAGACAGAGTCAGGC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCATGCCAGGCCTGGCTATTAATTTTCTTACTAGACAGAGTCAGGC  389

seq1  ACCATTTCCTTTCATGACATCCTTTTATCGAAAGTCGAACATGTTTTACA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCCTTTCATGACATCCTTTTATCGAAAGTCGAACATGTTTTACA  439

seq1  GATCCTGGCTTGTCATGAATCATCTTCCTTTCATCTGGAGCTCAAAGTAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGGCTTGTCATGAATCATCTTCCTTTCATCTGGAGCTCAAAGTAA  489

seq1  TGTTAAATACTCTATCTGGATAACAACAATAGGAAAATGATAAACTCCAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATACTCTATCTGGATAACAACAATAGGAAAATGATAAACTCCAG  539

seq1  GAGAGAAGGACGGTAAAGACATAAAGAGAGAGAGGCAGGAAAGCCTGGCA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGGACGGTAAAGACATAAAGAGAGAGAGGCAGGAAAGCCTGGCA  589

seq1  CAGAAAAGCAGCTGGATGCCTTCTCACTGGAACATGAAGTCAAAGATATT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGCAGCTGGATGCCTTCTCACTGGAACATGAAGTCAAAGATATT  639

seq1  GTGTTATTGCTTCTAATGTCCCATTAGAAGGGATGGTACTTGGTCTTACT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATTGCTTCTAATGTCCCATTAGAAGGGATGGTACTTGGTCTTACT  689

seq1  GGTACAAAGGGGGCCTTAGGAAGGCTGACCATGACACGAGTGACATGAGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAAAGGGGGCCTTAGGAAGGCTGACCATGACACGAGTGACATGAGT  739

seq1  GGGTGGAAAGAAGTCAAAAATCACTTTTGCAGGAGCATGCCCTTGCGCCA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAAAGAAGTCAAAAATCACTTTTGCAGGAGCATGCCCTTGCGCCA  789

seq1  TGCTCCCACAGGGAAATTGCACTTCAAATCACAGAAATCATGAATGAGGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCACAGGGAAATTGCACTTCAAATCACAGAAATCATGAATGAGGA  839

seq1  TCAGCTGTACTTAACTGTACTTAACATTGTCCTCCCACACTCGCGCGGTA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTACTTAACTGTACTTAACATTGTCCTCCCACACTCGCGCGGTA  889

seq1  CCGAGCATCCCGAAACCCAAGCAGGCAGAACAGAAGCAGGAGCACGGTGT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCATCCCGAAACCCAAGCAGGCAGAACAGAAGCAGGAGCACGGTGT  939

seq1  ATTCATGAGACCTTTCCTAGATTACCTGCCAGTCCAGGGCAGAATTC  987
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGAGACCTTTCCTAGATTACCTGCCAGTCCAGGGCAGAATTC  986

seq1: chr8_28881405_28882319
seq2: B6Ng01-339E22.g_64_989

seq1  GAATTCAGACGTTTGACCTTTGCAGTCTGTGTGGAAGGATAATTTTGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACGTTTGACCTTTGCAGTCTGTGTGGAAGGATAATTTTGCTA  50

seq1  AGGTACCAGATGGGAGAAAATTCAGCATTTGTGGGGTTGGAGGTGGTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCAGATGGGAGAAAATTCAGCATTTGTGGGGTTGGAGGTGGTACC  100

seq1  TTGGCTCTCTAATTTTAAACCCGAGATCAACCCCAAGCCACCCACTACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCTCTAATTTTAAACCCGAGATCAACCCCAAGCCACCCACTACCA  150

seq1  TCAAAGTGAGAGGAGGGAGGGAGTTGTCATCGGTAGAAGGGAGCCATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTGAGAGGAGGGAGGGAGTTGTCATCGGTAGAAGGGAGCCATTTA  200

seq1  TGTTTAGCGTTATCTAAAACTTTCAGACTATTGCGTCTTCTGATCTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGCGTTATCTAAAACTTTCAGACTATTGCGTCTTCTGATCTCTCC  250

seq1  ACTTTGCAATATATTGAGTAAAAAAAAATGTGTTTTAAAAATGTAACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCAATATATTGAGTAAAAAAAAATGTGTTTTAAAAATGTAACATC  300

seq1  TGGTTATATTAATTTTATTTATATTTATAATATATTTATAAAATAAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATATTAATTTTATTTATATTTATAATATATTTATAAAATAAAACA  350

seq1  TTTATAAAAATATTTAAGAATATAAAATAAATATTTATAAAAATATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAAATATTTAAGAATATAAAATAAATATTTATAAAAATATTTTT  400

seq1  TATTTATTTGGTTTTAAGTTGTATTTAAATTTTTATTTTTTATATGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTGGTTTTAAGTTGTATTTAAATTTTTATTTTTTATATGTGCA  450

seq1  TGTTCTTCCTGTATGAGAGTATGTACAGAGTGTGTGTGCAGTGCCCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCCTGTATGAGAGTATGTACAGAGTGTGTGTGCAGTGCCCACAG  500

seq1  AAGTCAGAAGAGACATTGGATTTCTTGGAACTGCAGCAGTCAGGGCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGAAGAGACATTGGATTTCTTGGAACTGCAGCAGTCAGGGCACTT  550

seq1  AACTGCTGAGCCATCTCTCTAGCCATAATAATCTCTTTAAAAACCAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGAGCCATCTCTCTAGCCATAATAATCTCTTTAAAAACCAGGGA  600

seq1  CCCCTTACCCTTTAGACCACTAAGTGTGGTTGCTGTGCCTGGATTTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTACCCTTTAGACCACTAAGTGTGGTTGCTGTGCCTGGATTTGAGT  650

seq1  CTTGTCACTGTTCCCTCTTCCAAGAATGAGGCTTTGGTTTCATGTCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCACTGTTCCCTCTTCCAAGAATGAGGCTTTGGTTTCATGTCTGCC  700

seq1  CTGAATTACTTTTTTAAATTTTGGACTGCATCTTCTATCCTGCACCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTACTTTTTTAAATTTTGGACTGCATCTTCTATCCTGCACCCTGA  750

seq1  AAGTTCTGTC-TTTTCTGTCAGATTAAGTCTTGCTTAACTTCTTATTAC-  798
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  AAGTTCTGTCTTTTTCTGTCAGATTAAGTCTTGCTTAACTTCTTATTACT  800

seq1  TCAGC-ATTTACCTCTCCAGGATAGCTTTCTGCAAATCAGT-GTCAGGGG  846
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCAGCAATTTACCTCTCCAGGATAGCTTTCTGCAAATCAGTGGTCAGGGG  850

seq1  TTCTATTC-TGCATGTAATTTCAGTGCATTCTCCC--TTC-CCGGCTTTT  892
      |||||||| ||||||| ||||||||||||||||||  ||| | |||||||
seq2  TTCTATTCTTGCATGTTATTTCAGTGCATTCTCCCCTTTCTCGGGCTTTT  900

seq1  GTGCAT--GCCATCAGTGTA-GTGAT  915
      ||||||   ||||||||||| |||||
seq2  GTGCATTGCCCATCAGTGTAGGTGAT  926