BAC Information

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BAC

Clone NameB6Ng01-340D20
Chromosome8 (Build37)
Map Location 127,385,955 - 127,484,168
singlet/doubletdoublet
Overlap gene2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1
Upstream geneActa1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5, Cog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67
Downstream geneTsnax, Disc1, Sipa1l2, 4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340D20.bB6Ng01-340D20.g
ACCGA124006GA124007
length1,109117
definitionB6Ng01-340D20.b B6Ng01-340D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,385,955 - 127,387,065)(127,484,052 - 127,484,168)
sequence
gaattcctgcatgtgtgaatatcaactgtatctaggattttaaaaattag
tcttaaaacttgtgaaagtcagccaggtggtggtggtggcggcggcgcac
gactttaatcccagcacttgggagacagaggcaggcggatttctgagttc
gaggccagcctggtctacagagtgagttccaggacagccagggctacaca
gagaaaccctgtcttgaaaaaccaaaaagaaaaaaaaaaaaaaaacccaa
acaaacaaacttgtgaaagtcggaggccaagtgttgtcggtggacacaaa
gaacctaacacagcgcagaatgtgacatcaggccctagaccttgagactc
gagctcttaaggaggacctttatgaagatgtgtgtacatatatgggttgc
tctgacagttaatgagggaaacacacaaaaatgcatgtacatgtacacct
ggtacgttcttccaagttctcagcttgcttttgctttttaatcgtgtaag
tgagcttggaattttgagcaaccgctccaaaataaaaacaatacagcgtt
tgttacgtgtctggttctaaaagtcaggcaatcaacgtgagctcttctgc
ctgccagtgcctgtccttctgcgagtggcctgcctttagtaaccatctct
gattttattttcctgcacagtgagaaggagagcaaaaggtcggccaacaa
gtgggggagaaggtcccggagagggtagcgcttgcggacatggctccagg
agaccacgtgggccgtggtcccgccgcctcgggatgcgtttcactgtctt
tggccgcctcctcccaggagctacgctcacccaggtcgtagagggtccgc
agaacgggcgtccaggagtgcctccgaaccaggaggctcaacggagtccg
aatcgtgctccgccgccatgggaatcagcacggagacccccccagatccc
ggcccagtgcccaccacttccgcttcggcgcggctctgcgcgtgcgtcac
ggtccctggcgcggctcgggctggttagatgcggtgcccggggtctcgtg
gcagtggccggtacggagtgcactggtcctgggcagacgggagcggtcca
tgcgaaaga
aaagaatgtaatagaaccccaacaggtatgaaagaaagagctgcatagac
tgtggaaagcccagtgagagtgtatgtgtgtgagtgttgtgagtttgtga
gtgtgtgtgtgtgatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_127385955_127387065
seq2: B6Ng01-340D20.b_46_1154

seq1  GAATTCCTGCATGTGTGAATATCAACTGTATCTAGGATTTTAAAAATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCATGTGTGAATATCAACTGTATCTAGGATTTTAAAAATTAG  50

seq1  TCTTAAAACTTGTGAAAGTCAGCCAGGTGGTGGTGGTGGCGGCGGCGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAACTTGTGAAAGTCAGCCAGGTGGTGGTGGTGGCGGCGGCGCAC  100

seq1  GACTTTAATCCCAGCACTTGGGAGACAGAGGCAGGCGGATTTCTGAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAATCCCAGCACTTGGGAGACAGAGGCAGGCGGATTTCTGAGTTC  150

seq1  GAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACA  200

seq1  GAGAAACCCTGTCTTGAAAAACCAAAAAGAAAAAAAAAAAAAAAACCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCCTGTCTTGAAAAACCAAAAAGAAAAAAAAAAAAAAAACCCAA  250

seq1  ACAAACAAACTTGTGAAAGTCGGAGGCCAAGTGTTGTCGGTGGACACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACTTGTGAAAGTCGGAGGCCAAGTGTTGTCGGTGGACACAAA  300

seq1  GAACCTAACACAGCGCAGAATGTGACATCAGGCCCTAGACCTTGAGACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTAACACAGCGCAGAATGTGACATCAGGCCCTAGACCTTGAGACTC  350

seq1  GAGCTCTTAAGGAGGACCTTTATGAAGATGTGTGTACATATATGGGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTTAAGGAGGACCTTTATGAAGATGTGTGTACATATATGGGTTGC  400

seq1  TCTGACAGTTAATGAGGGAAACACACAAAAATGCATGTACATGTACACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAGTTAATGAGGGAAACACACAAAAATGCATGTACATGTACACCT  450

seq1  GGTACGTTCTTCCAAGTTCTCAGCTTGCTTTTGCTTTTTAATCGTGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACGTTCTTCCAAGTTCTCAGCTTGCTTTTGCTTTTTAATCGTGTAAG  500

seq1  TGAGCTTGGAATTTTGAGCAACCGCTCCAAAATAAAAACAATACAGCGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTGGAATTTTGAGCAACCGCTCCAAAATAAAAACAATACAGCGTT  550

seq1  TGTTACGTGTCTGGTTCTAAAAGTCAGGCAATCAACGTGAGCTCTTCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACGTGTCTGGTTCTAAAAGTCAGGCAATCAACGTGAGCTCTTCTGC  600

seq1  CTGCCAGTGCCTGTCCTTCTGCGAGTGGCCTGCCTTTAGTAACCATCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGTGCCTGTCCTTCTGCGAGTGGCCTGCCTTTAGTAACCATCTCT  650

seq1  GATTTTATTTTCCTGCACAGTGAGAAGGAGAGCAAAAGGTCGGCCAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATTTTCCTGCACAGTGAGAAGGAGAGCAAAAGGTCGGCCAACAA  700

seq1  GTGGGGGAGAAGGTCCCGGAGAGGGTAGCGCTTGCGGACATGGCTCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGAGAAGGTCCCGGAGAGGGTAGCGCTTGCGGACATGGCTCCAGG  750

seq1  AGACCACGTGGGCCGTGGTCCCGCCGCCTCGGGATGCGTTTCACTGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACGTGGGCCGTGGTCCCGCCGCCTCGGGATGCGTTTCACTGTCTT  800

seq1  TGGCCGCCTCCTCCCAGGAGCTACGCTCACCCAGGTCGTAGAGGGTCCGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGCCTCCTCCCAGGAGCTACGCTCACCCAGGTCGTAGAGGGTCCGC  850

seq1  AGAAC-GGCGTCCAGGAGTGCCTCCGAACCAGGAGGCTCAACGGAGTCCG  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGGGCGTCCAGGAGTGCCTCCGAACCAGGAGGCTCAACGGAGTCCG  900

seq1  AATCGTGCTCCGCCGCCATGGGAATCAGCACGGAGACCCCCCCAGATCCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTGCTCCGCCGCCATGGGAATCAGCACGGAGACCCCCCCAGATCCC  950

seq1  -GCCCAGTGCCCACCACTTCCGCTTCCGGCGCGGCTTCTGCGCGTGCGTC  998
       |||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  GGCCCAGTGCCCACCACTTCCGCTT-CGGCGCGGC-TCTGCGCGTGCGTC  998

seq1  ACGGTCCCT-GCGCGGCCTCGGGCCTGGTTAAGATGGCGGTGCCCGGGGT  1047
      ||||||||| |||||| |||||| |||||| |||| ||||||||||||||
seq2  ACGGTCCCTGGCGCGG-CTCGGG-CTGGTT-AGAT-GCGGTGCCCGGGGT  1044

seq1  CCCGT-GCAGTGGCC-GTACGGAGTGCCACT-GTCCTGGGCAGACGGGAG  1094
      | ||| ||||||||| |||||||||| |||| ||||||||||||||||||
seq2  CTCGTGGCAGTGGCCGGTACGGAGTG-CACTGGTCCTGGGCAGACGGGAG  1093

seq1  CCGCCCCGTGCGAAAGA  1111
       ||  || |||||||||
seq2  -CGGTCCATGCGAAAGA  1109

seq1: chr8_127484052_127484168
seq2: B6Ng01-340D20.g_70_186 (reverse)

seq1  CCATCACACACACACACTCACAAACTCACAACACTCACACACATACACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACACACACACACTCACAAACTCACAACACTCACACACATACACTC  50

seq1  TCACTGGGCTTTCCACAGTCTATGCAGCTCTTTCTTTCATACCTGTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGGCTTTCCACAGTCTATGCAGCTCTTTCTTTCATACCTGTTGGG  100

seq1  GTTCTATTACATTCTTT  117
      |||||||||||||||||
seq2  GTTCTATTACATTCTTT  117