BAC Information

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BAC

Clone NameB6Ng01-340O11
Chromosome8 (Build37)4 (Build37)
Map Location 61,866,418 - 61,866,52461,996,621 - 61,997,641
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340O11.bB6Ng01-340O11.g
ACCGA124453GA124454
length1,0301,028
definitionB6Ng01-340O11.b B6Ng01-340O11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,866,418 - 61,866,524)(61,996,621 - 61,997,641)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaaagcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaatttcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacactcctccattgttggt
gggattgcaagtttgtacaaccactctggaaatcagtctggcggttccct
tagaaaattggacatagtactaccgggtgatccagcaatacctcttctgg
gcatatatccaaaacatgtcccaaccggtatgaaggacacatgctccact
aagttcatagcagccttatttataatagccagaagctggaaagaagccag
atgcccctcaacagaggaatggatacagaaaatgtggtacatttacacaa
tggagtactactcagctattaaaaagaatgaatttatgaaattcctaggc
aaatggatggacctggagggcatcatcctgagtgaggtaacccaatcaca
aaggaactcacacaatatgtactcactgataagtggacattagcccaaaa
cttaggatacccaagatataagatacaatttgccaaatgcatgaaactct
agaagaatgaagaccaaagtgtggacactgtgccccttcttaaaattggg
aaaaaacacccatggaaggacccagatatagctgtctcttgaaagactat
gccaaggcctagcaaacacagaagtggatgctcacagtcagctattggat
gaatcacagggctcccaatggaggagctagagaaagtacccaaaggaggt
aaagggacctgcaaccctatagatggaataacattatgaactaaccagta
ccccggagctcttgaccctagctacatatgtatcaaaagatggcctagtc
agccatcactggaaagagagcccattgacacataaactttatatgcccca
ctacaggggaatgccagggccaaaaaaatg

gaattctttgttcacgtgtattttatctgatgagcatttcctcacttctg
acgtctctagggcttagaggacgggctactgggcatgaagaaaggaggaa
agcgcttaattatcactccttcagcctgcgctgctggctctgaaggagta
ataggctggactcagccaacagactccatcctggtgtttgaggtagaagt
taggcgggtaagtgaaactggcctgtgttcttataaatcagattctgaag
atatagctagcttttaaaatagaagtggtagggtaggacgaaggttggga
aagttctttccttcaggcatgaggtctgagttcagtccccaggacgtaca
taaacatactgacacggtggtgcagatttgtattgaccacacatatttgt
atacatagccatgcgcttgcgcgcgcgcgcacacacacacacacacacac
tcatgcttcaaagctttagaagaaatgatgaatgattttctctgaaaatg
gcattggagttaagcatcttgtcttttttcaatgtataaaaatcttgtca
gtaaggtgtggtgggacatatttttaatcccagcacttgggaggcagaag
cagtcagatattaatgagtttatggccaacttggactactaatgagtttc
aggccagccagggtcacacagagagactctacctttgaatatgttttcta
tactaaaatagcaacaacttttggttagtttatagtattccttctccaaa
atgaccctgatattattaggttgaatggtgctggtgactataaaccataa
aacacagtacaaataatgaattttatggctatttctatatagtcgttatg
tttgtcacagcagagaggtaccctcctaatgggagaccggttttctctgt
tgggtcatctaattcttacagtgggcatgtccccagatgccttttttttc
taaacatagaattcccttaagttttctttgagcctcaaggaaaccatggg
ttaatgatagcaaactatttttgaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_61866418_61866524
seq2: B6Ng01-340O11.b_572_678 (reverse)

seq1  AAATTGTATCTTATATCTTGGGTATCCTAGGTTTTGGGCTAATATCCACT  50
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  AAATTGTATCTTATATCTTGGGTATCCTAAGTTTTGGGCTAATGTCCACT  50

seq1  TATCAGTAAGTACATATTGTGTGAGTTCCTTTGTGAATGTGTTACCTCAC  100
      ||||||| |||||||||||||||||||||||||||| || ||||||||||
seq2  TATCAGTGAGTACATATTGTGTGAGTTCCTTTGTGATTGGGTTACCTCAC  100

seq1  TCAGGAT  107
      |||||||
seq2  TCAGGAT  107


seq1: chr4_61996621_61997641
seq2: B6Ng01-340O11.g_67_1094 (reverse)

seq1  AGTTTC-AAAATAGTTTGCTATCATT-ACCCATGGTTTCCTTGA-GCTCA  47
      |||||| ||||||||||||||||||| ||||||||||||||||| |||||
seq2  AGTTTCAAAAATAGTTTGCTATCATTAACCCATGGTTTCCTTGAGGCTCA  50

seq1  AAGAAAACTTAAGGGAA-TCTATGTTTAGAAAAAAAAGGCATCTGGGGAC  96
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGAAAACTTAAGGGAATTCTATGTTTAGAAAAAAAAGGCATCTGGGGAC  100

seq1  ATG-CCACTGTAAG-ATTAGATGACCCAACAGAG-AAACCGGTCTCCCAT  143
      ||| |||||||||| ||||||||||||||||||| |||||||||||||||
seq2  ATGCCCACTGTAAGAATTAGATGACCCAACAGAGAAAACCGGTCTCCCAT  150

seq1  TAGGAGGGTACCTCTCTGCTGTGACAAACATAACGACTATATAGAAATAG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGGTACCTCTCTGCTGTGACAAACATAACGACTATATAGAAATAG  200

seq1  CCATAAAATTCATTATTTGTACTGTGTTTTATGGTTTATAGTCACCAGCA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAATTCATTATTTGTACTGTGTTTTATGGTTTATAGTCACCAGCA  250

seq1  CCATTCAACCTAATAATATCAGGGTCATTTTGGAGAAGGAATACTATAAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAACCTAATAATATCAGGGTCATTTTGGAGAAGGAATACTATAAA  300

seq1  CTAACCAAAAGTTGTTGCTATTTTAGTATAGAAAACATATTCAAAGGTAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAAAAGTTGTTGCTATTTTAGTATAGAAAACATATTCAAAGGTAG  350

seq1  AGTCTCTCTGTGTGACCCTGGCTGGCCTGAAACTCATTAGTAGTCCAAGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTCTGTGTGACCCTGGCTGGCCTGAAACTCATTAGTAGTCCAAGT  400

seq1  TGGCCATAAACTCATTAATATCTGACTGCTTCTGCCTCCCAAGTGCTGGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATAAACTCATTAATATCTGACTGCTTCTGCCTCCCAAGTGCTGGG  450

seq1  ATTAAAAATATGTCCCACCACACCTTACTGACAAGATTTTTATACATTGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATATGTCCCACCACACCTTACTGACAAGATTTTTATACATTGA  500

seq1  AAAAAGACAAGATGCTTAACTCCAATGCCATTTTCAGAGAAAATCATTCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACAAGATGCTTAACTCCAATGCCATTTTCAGAGAAAATCATTCA  550

seq1  TCATTTCTTCTAAAGCTTTGAAGCATGAGTGTGTGTGTGTGTGTGTGTGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTTCTAAAGCTTTGAAGCATGAGTGTGTGTGTGTGTGTGTGTGC  600

seq1  GCGCGCGCGCAAGCGCATGGCTATGTATACAAATATGTGTGGTCAATACA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCGCGCAAGCGCATGGCTATGTATACAAATATGTGTGGTCAATACA  650

seq1  AATCTGCACCACCGTGTCAGTATGTTTATGTACGTCCTGGGGACTGAACT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCACCACCGTGTCAGTATGTTTATGTACGTCCTGGGGACTGAACT  700

seq1  CAGACCTCATGCCTGAAGGAAAGAACTTTCCCAACCTTCGTCCTACCCTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTCATGCCTGAAGGAAAGAACTTTCCCAACCTTCGTCCTACCCTA  750

seq1  CCACTTCTATTTTAAAAGCTAGCTATATCTTCAGAATCTGATTTATAAGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTATTTTAAAAGCTAGCTATATCTTCAGAATCTGATTTATAAGA  800

seq1  ACACAGGCCAGTTTCACTTACCCGCCTAACTTCTACCTCAAACACCAGGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGCCAGTTTCACTTACCCGCCTAACTTCTACCTCAAACACCAGGA  850

seq1  TGGAGTCTGTTGGCTGAGTCCAGCCTATTACTCCTTCAGAGCCAGCAGCG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCTGTTGGCTGAGTCCAGCCTATTACTCCTTCAGAGCCAGCAGCG  900

seq1  CAGGCTGAAGGAGTGATAATTAAGCGCTTTCCTCCTTTCTTCATGCCCAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGAAGGAGTGATAATTAAGCGCTTTCCTCCTTTCTTCATGCCCAG  950

seq1  TAGCCCGTCCTCTAAGCCCTAGAGACGTCAGAAGTGAGGAAATGCTCATC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCGTCCTCTAAGCCCTAGAGACGTCAGAAGTGAGGAAATGCTCATC  1000

seq1  AGATAAAATACACGTGAACAAAGAATTC  1021
      ||||||||||||||||||||||||||||
seq2  AGATAAAATACACGTGAACAAAGAATTC  1028


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