BAC Information

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BAC

Clone NameB6Ng01-342B05
Chromosome8 (Build37)
Map Location 129,957,152 - 130,060,091
singlet/doubletdoublet
Overlap genePard3
Upstream geneEG619653, Irf2bp2, Tomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1
Downstream geneEG628847, Nrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342B05.bB6Ng01-342B05.g
ACCGA125270GA125271
length1,069893
definitionB6Ng01-342B05.b B6Ng01-342B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,957,152 - 129,958,216)(130,059,201 - 130,060,091)
sequence
gaattctttcagaagacagggatatgggttttcttttcccccctctctca
ggtttttgttttgtgcttcttaattattaaatttttttcttactggatga
gcatagccatgagcagataccaattggatgtttgaatcactgcgtccaag
atgaaatgcagcagtaaagattccagttttgtctcccgcataccttggca
acaagggagaacctcagactaggttagggagcaggactgaattgagcaag
gtgaaggacagtcatcgccccacctgggatgaaatgcaaggtgcaaagat
cagaaaccaaatggttgggtctgaagggacctctgggcaagtgaaagtcc
ctcagtgggtttcaggttccagactgaaaaagcagtcaagaagagtttct
aaggtgctcctagtgcttcgatgtggacccacctgtccataggattgcag
agagtagggggtggagaagggcatactcagaggagtgtgtcttagtcagg
gtttgtattcctgcacaagtaggggaggaaaagtttattcagcttatact
tccacactgctgctcatcaccaaaggaagtcagggtaggaattcacacag
ggcaggaacctggaggcaggagctgatgcagaggctatggaggaatgctg
cttactgggttgcttcccgtagcttgctcagcttgccttcttatagaacc
caggaccaccagtccaggaatggcaccacccacaatgagtagggccctcc
cctctttgatcaccaattgagaaaatgcctttacagctgcatctcatggc
ggcctttcctccagggaggctcctttctctgtgataactccagcttgtgt
caagctgatacacaaaaccagccagtgcagagtgtttgtaggaagagacg
caagggcccagtgttctgtgtccatgtggtgaagcacactgtcctctgct
tagggagaactggctgccctgttaggagctgttaactctacatctctcca
tcattcatgctcctgggagtctactgagatgttagaagctgtatgttact
gatagaacaatgggcatga

gaattcagtacctagtgtggagttctgagtggcggggcaagccttcccta
gatcacacaaaacatctttttgagttaaacaagtaattcttcccactgaa
gcatctaatttgaatttaaacatttctttacatgctaccttaattagatg
caagttcctctcagcatcttaattttatgcattttacacttctaagcagc
actagtgaggactgcttatttgcattcatttacatacaatttgcaagaaa
tgttgaaaaacctagaaagaaggagattgtaaatttatggattttttttc
ttcaaataaaaatgtcagttctatgaggaaacaaacagtagtttttctcc
ccctccttgcccactttggtattttcaaggcgatttttaatacatatata
cataaagagatctatttaaggaatgccaggataggaagattcccctgcca
gttaacagccaggaaaaggctccaaacttccaactgctgtaagaaggaac
gaactcaagcagatgatacctcccaaaatacattatctgaaaagtgcatc
tccctccacaatgagggcgcatttgatcagttctgctctgaggatgcatt
ccctgccagactcatttctttagtgatgggcagttcattcctgagacttt
cagttgtgttaattagattttctccatgtccacctatcctcttgagcttg
gatttatattcacagaactcctcaccatcctttcaggagcttcttggagc
ggtgctgcagtctggtttctcactgcagatgcaggcagtcgatacttccc
aggttttcaatgcctcacatttgaactgacatcgctattattattcttgg
gctcagagactgccctggagatagctctgttgttgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_129957152_129958216
seq2: B6Ng01-342B05.b_46_1114

seq1  GAATTCTTTCAGAAGACAGGGATATGGGTTTTCTTTTCCCCCCTCTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGAAGACAGGGATATGGGTTTTCTTTTCCCCCCTCTCTCA  50

seq1  GGTTTTTGTTTTGTGCTTCTTAATTATTAAATTTTTTTCTTACTGGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTGTTTTGTGCTTCTTAATTATTAAATTTTTTTCTTACTGGATGA  100

seq1  GCATAGCCATGAGCAGATACCAATTGGATGTTTGAATCACTGCGTCCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCCATGAGCAGATACCAATTGGATGTTTGAATCACTGCGTCCAAG  150

seq1  ATGAAATGCAGCAGTAAAGATTCCAGTTTTGTCTCCCGCATACCTTGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGCAGCAGTAAAGATTCCAGTTTTGTCTCCCGCATACCTTGGCA  200

seq1  ACAAGGGAGAACCTCAGACTAGGTTAGGGAGCAGGACTGAATTGAGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGAGAACCTCAGACTAGGTTAGGGAGCAGGACTGAATTGAGCAAG  250

seq1  GTGAAGGACAGTCATCGCCCCACCTGGGATGAAATGCAAGGTGCAAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGACAGTCATCGCCCCACCTGGGATGAAATGCAAGGTGCAAAGAT  300

seq1  CAGAAACCAAATGGTTGGGTCTGAAGGGACCTCTGGGCAAGTGAAAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCAAATGGTTGGGTCTGAAGGGACCTCTGGGCAAGTGAAAGTCC  350

seq1  CTCAGTGGGTTTCAGGTTCCAGACTGAAAAAGCAGTCAAGAAGAGTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGGTTTCAGGTTCCAGACTGAAAAAGCAGTCAAGAAGAGTTTCT  400

seq1  AAGGTGCTCCTAGTGCTTCGATGTGGACCCACCTGTCCATAGGATTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCTCCTAGTGCTTCGATGTGGACCCACCTGTCCATAGGATTGCAG  450

seq1  AGAGTAGGGGGTGGAGAAGGGCATACTCAGAGGAGTGTGTCTTAGTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGGGGGTGGAGAAGGGCATACTCAGAGGAGTGTGTCTTAGTCAGG  500

seq1  GTTTGTATTCCTGCACAAGTAGGGGAGGAAAAGTTTATTCAGCTTATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTATTCCTGCACAAGTAGGGGAGGAAAAGTTTATTCAGCTTATACT  550

seq1  TCCACACTGCTGCTCATCACCAAAGGAAGTCAGGGTAGGAATTCACACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTGCTGCTCATCACCAAAGGAAGTCAGGGTAGGAATTCACACAG  600

seq1  GGCAGGAACCTGGAGGCAGGAGCTGATGCAGAGGCTATGGAGGAATGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAACCTGGAGGCAGGAGCTGATGCAGAGGCTATGGAGGAATGCTG  650

seq1  CTTACTGGGTTGCTTCCCGTAGCTTGCTCAGCTTGCCTTCTTATAGAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGGGTTGCTTCCCGTAGCTTGCTCAGCTTGCCTTCTTATAGAACC  700

seq1  CAGGACCACCAGTCCAGGAATGGCACCACCCACAATGAGTAGGGCCCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCACCAGTCCAGGAATGGCACCACCCACAATGAGTAGGGCCCTCC  750

seq1  CCTCTTTGATCACCAATTGAGAAAATGCC-TTACAGCTGCATCTCATGGC  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTCTTTGATCACCAATTGAGAAAATGCCTTTACAGCTGCATCTCATGGC  800

seq1  GGCCTTTCCTCCAGGGAGGCTCCTTTCTCTGTGATAACTCCAGCTTGTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTCCTCCAGGGAGGCTCCTTTCTCTGTGATAACTCCAGCTTGTGT  850

seq1  CAAGCTGATACACAAAACCAGCCAGTGCAGAGTGTTTGTAGGAAGAGACG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGATACACAAAACCAGCCAGTGCAGAGTGTTTGTAGGAAGAGACG  900

seq1  CAA-GGCCCAGTGTTCTGTGTCCATGTGGTGAAGCACAACTGTCCTCTGC  948
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAAGGGCCCAGTGTTCTGTGTCCATGTGGTGAAGCAC-ACTGTCCTCTGC  949

seq1  TTAGGGAGAAACTGGCTGCCCTGTAAGAAGCTG-TAACTCTACATCTCTC  997
      |||||||| ||||||||||||||| || ||||| ||||||||||||||||
seq2  TTAGGGAG-AACTGGCTGCCCTGTTAGGAGCTGTTAACTCTACATCTCTC  998

seq1  CATCATTCATGCTCCTGGAAGTCTACTGAGATGTTAG-AGCTGTATG-TA  1045
      |||||||||||||||||| |||||||||||||||||| ||||||||| ||
seq2  CATCATTCATGCTCCTGGGAGTCTACTGAGATGTTAGAAGCTGTATGTTA  1048

seq1  CTGATAAGAC-ATGGGCATGA  1065
      ||||||  || ||||||||||
seq2  CTGATAGAACAATGGGCATGA  1069


seq1: chr8_130059201_130060091
seq2: B6Ng01-342B05.g_66_958 (reverse)

seq1  CACACACACA--CACAGAGCTATCTCCAGGGCAGTCTCTGAGCCCAAGAA  48
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  CACACACACAACAACAGAGCTATCTCCAGGGCAGTCTCTGAGCCCAAGAA  50

seq1  TAATAATAGCGATGTCAGTTCAAATGTGAGGCATTGAAAACCTGGGAAGT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAGCGATGTCAGTTCAAATGTGAGGCATTGAAAACCTGGGAAGT  100

seq1  ATCGACTGCCTGCATCTGCAGTGAGAAACCAGACTGCAGCACCGCTCCAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGACTGCCTGCATCTGCAGTGAGAAACCAGACTGCAGCACCGCTCCAA  150

seq1  GAAGCTCCTGAAAGGATGGTGAGGAGTTCTGTGAATATAAATCCAAGCTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCCTGAAAGGATGGTGAGGAGTTCTGTGAATATAAATCCAAGCTC  200

seq1  AAGAGGATAGGTGGACATGGAGAAAATCTAATTAACACAACTGAAAGTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGATAGGTGGACATGGAGAAAATCTAATTAACACAACTGAAAGTCT  250

seq1  CAGGAATGAACTGCCCATCACTAAAGAAATGAGTCTGGCAGGGAATGCAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATGAACTGCCCATCACTAAAGAAATGAGTCTGGCAGGGAATGCAT  300

seq1  CCTCAGAGCAGAACTGATCAAATGCGCCCTCATTGTGGAGGGAGATGCAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGCAGAACTGATCAAATGCGCCCTCATTGTGGAGGGAGATGCAC  350

seq1  TTTTCAGATAATGTATTTTGGGAGGTATCATCTGCTTGAGTTCGTTCCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGATAATGTATTTTGGGAGGTATCATCTGCTTGAGTTCGTTCCTT  400

seq1  CTTACAGCAGTTGGAAGTTTGGAGCCTTTTCCTGGCTGTTAACTGGCAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGCAGTTGGAAGTTTGGAGCCTTTTCCTGGCTGTTAACTGGCAGG  450

seq1  GGAATCTTCCTATCCTGGCATTCCTTAAATAGATCTCTTTATGTATATAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTTCCTATCCTGGCATTCCTTAAATAGATCTCTTTATGTATATAT  500

seq1  GTATTAAAAATCGCCTTGAAAATACCAAAGTGGGCAAGGAGGGGGAGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAAAATCGCCTTGAAAATACCAAAGTGGGCAAGGAGGGGGAGAAA  550

seq1  AACTACTGTTTGTTTCCTCATAGAACTGACATTTTTATTTGAAGAAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTGTTTGTTTCCTCATAGAACTGACATTTTTATTTGAAGAAAAAA  600

seq1  AATCCATAAATTTACAATCTCCTTCTTTCTAGGTTTTTCAACATTTCTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATAAATTTACAATCTCCTTCTTTCTAGGTTTTTCAACATTTCTTG  650

seq1  CAAATTGTATGTAAATGAATGCAAATAAGCAGTCCTCACTAGTGCTGCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGTATGTAAATGAATGCAAATAAGCAGTCCTCACTAGTGCTGCTT  700

seq1  AGAAGTGTAAAATGCATAAAATTAAGATGCTGAGAGGAACTTGCATCTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGTAAAATGCATAAAATTAAGATGCTGAGAGGAACTTGCATCTAA  750

seq1  TTAAGGTAGCATGTAAAGAAATGTTTAAATTCAAATTAGATGCTTCAGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTAGCATGTAAAGAAATGTTTAAATTCAAATTAGATGCTTCAGTG  800

seq1  GGAAGAATTACTTGTTTAACTCAAAAAGATGTTTTGTGTGATCTAGGGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAATTACTTGTTTAACTCAAAAAGATGTTTTGTGTGATCTAGGGAA  850

seq1  GGCTTGCCCCGCCACTCAGAACTCCACACTAGGTACTGAATTC  891
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCCCCGCCACTCAGAACTCCACACTAGGTACTGAATTC  893


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