BAC Information

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BAC

Clone NameB6Ng01-342P22
Chromosome8 (Build37)
Map Location 108,335,570 - 108,336,215
singlet/doubletsinglet
Overlap geneRanbp10
Upstream geneBC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2
Downstream geneTsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342P22.bB6Ng01-342P22.g
ACCGA125903GA125904
length7361,052
definitionB6Ng01-342P22.b B6Ng01-342P22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttacctctaattgctgcttgatgagcctatctgatttgctcc
tttcttctatgtgacggcgagggaagaggagataacattcaacaaagacc
tccagaaaactgtaagggacccaacacactggcctggaggctgcaaaaac
ttgaaccactttcctacttcttaggttctgccactgactgcccaaatctg
atgccttggcatctaccatagtctctctgtccccactgtggctttgcagt
gcaacatcaagccgggtggaatccacctgagacctgcagaaggggcagcc
acactgcaggtgggcaggataggccctcttctaaccacacccctattata
tctacccagaagttcttaccactgactcatagacaaaaggggtcaacttc
agaataggatggcagctactggggcccaggatgcctatcattcattcctg
ccctctctgccacagaagtagcaagcatgctaaaactggtcatatggaga
gatgcaaacatatttgtcaacttggactcttcccatctctgttttccata
tttcctataacatgaattctttgttgatgatgggtttgatttctttcttt
tttgttttctgtttgttttgtgtaagttggtgtgtgggtgcgttaattaa
agcttgacaagaagtaaaataggaaagtctgtgcttgttagataaagctt
tgtataagaatctgggttttttgttttgtttatttt
gaattcttttgattgtttgttttttgttttttgaaactgggtttttctgt
tctgggaattgtgtcccggaactctctctgtacaccgcgatgggatgttt
ttcggaaatctgggtgtatcttcctcccccccgcttttatctttggcttg
ctccaccaacaatggaaatcttaccctctctttcctcggatgggtaacct
ccgagagaatagccctttcctttgccctttgaatgcctccctaggaaatg
acttctatgagcttaactaatctgagtttgaaggattttgtgagacattc
tcgggtgggcaactggtttgggcttctccggacctaggggtgtgtgtcag
gctggcttctcttccactcccaactgccctctctttgcagccatccaggc
tatggatctcatggccctttcaatacacttcaccttcccagacccccttg
caaccttacgtctgtcctccagggccagtatcctttgccttccttgcagc
ccctcaccaaggtgaccacttcctcctcccctccattcctagggcctctc
ccagcccatggctctgctgtggatagattctttcctttctcctttcctat
tggctcttccagctgttaccctctggttacagaggcttgttttccctcca
gcctctgtcccactctgccctccatagctagagctgcagggaatgtgtct
ctggaaagattcccatgttttgtgccttccaacgggaaatttccctttct
ggacccaagctgagaagtaagatctggattttaagacatggttcagggtc
ctaaactccgaacctgtacattcatctgcctcacagccaagtaatgtcag
cttctcgggtcttccacacatttcaaagggcctacatcttcactcatcac
tcctaacctggcttcctgtgtataggatcagaaaggacataaaagcttag
acagtgggcagatgggagagtcacataaggccacaggggcagaacccctt
ggaacccttgagtgctggagtcttgtgcctctggtccccactgaagaatt
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108335570_108336215
seq2: B6Ng01-342P22.b_43_682

seq1  GAATTCATTTACCTCACAAGCAACTGCAGGATGAACCTATCTGATTTGCT  50
      ||||||||||||||  | |    ||||  ||||| |||||||||||||||
seq2  GAATTCATTTACCT--CTAATTGCTGCTTGATGAGCCTATCTGATTTGCT  48

seq1  CTTTTCTTCTATGTGACGGCAAAACAGAGAGGAGATAACATTCAACAAAG  100
      | |||||||||||||||||| |   | |||||||||||||||||||||||
seq2  CCTTTCTTCTATGTGACGGCGAGGGA-AGAGGAGATAACATTCAACAAAG  97

seq1  ACAGCCAGGAAGCACAGAAGGACAAAAGACAAGTGCCTGGTGGTAGCAGA  150
      ||  |||| || |    | ||||  || |||   |||||| ||  ||| |
seq2  ACCTCCAGAAAACTGTAAGGGACCCAACACACTGGCCTGGAGGCTGCAAA  147

seq1  GTCATGAGCTACTTTCTTACTTCTTAGTTTCTGCCACTGACTGCCAAAAT  200
        | ||| | |||||| |||||||||| ||||||||||||||||| ||||
seq2  AACTTGAACCACTTTCCTACTTCTTAGGTTCTGCCACTGACTGCCCAAAT  197

seq1  CACAATGCAAGCT--GCATCTACAAGAGTCTCTCTGTCCCCACTGTGGCT  248
      |   ||||   ||  |||||||| | ||||||||||||||||||||||||
seq2  C-TGATGC---CTTGGCATCTACCATAGTCTCTCTGTCCCCACTGTGGCT  243

seq1  TTGCAGTGCAAGATCAAGCCAGGTAGAGATCCACCTGAGACCTGGAGAAG  298
      ||||||||||| |||||||| ||| || |||||||||||||||| |||||
seq2  TTGCAGTGCAACATCAAGCCGGGTGGA-ATCCACCTGAGACCTGCAGAAG  292

seq1  GGGCAGCCACACTGTAGGTGGGCAGGATAGGCCCTCAGCTAACCACACCC  348
      |||||||||||||| |||||||||||||||||||||  ||||||||||||
seq2  GGGCAGCCACACTGCAGGTGGGCAGGATAGGCCCTCTTCTAACCACACCC  342

seq1  ATATTATATCTACCCAGAAGTTCTTACCACTGACTCATAGACAAAAGGGG  398
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATATCTACCCAGAAGTTCTTACCACTGACTCATAGACAAAAGGGG  392

seq1  TCAACTTCAGAATAGGATGGCAGCTACTGGGGCCCAGGATGCCTATCATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTCAGAATAGGATGGCAGCTACTGGGGCCCAGGATGCCTATCATT  442

seq1  CATTCCTGCCCTCTCTGCCACAGAAGTAGCAAGCATGCTAAAACTGGTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGCCCTCTCTGCCACAGAAGTAGCAAGCATGCTAAAACTGGTCA  492

seq1  TATGGAGAGATGCAAACATATTTGTCAACTTGGACTCTTCCCATCTCTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGAGATGCAAACATATTTGTCAACTTGGACTCTTCCCATCTCTGT  542

seq1  TTTCCATATTTCCTATAACATGAATTCTTTGTTGATGATGGGTTTGATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATATTTCCTATAACATGAATTCTTTGTTGATGATGGGTTTGATTT  592

seq1  CTTTCTTTTTTGTTTTCTGTTTGTTTTGTGTAAGTTGGTGTGTGGGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTTTGTTTTCTGTTTGTTTTGTGTAAGTTGGTGTGTGGGTG  640