BAC Information

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BAC

Clone NameB6Ng01-344L05
Chromosome8 (Build37)
Map Location 104,500,537 - 104,679,939
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618, LOC100041368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344L05.bB6Ng01-344L05.g
ACCGA127117GA127118
length1,0751,075
definitionB6Ng01-344L05.b B6Ng01-344L05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,500,537 - 104,501,618)(104,678,861 - 104,679,939)
sequence
gaattccttcctgttgatgtgtcttatgcccaatttgagagctattggtt
atcaacgaggtatgtatgccaccactgctcctttagggttattatgccat
gccggtcagtgtagttcatgcatattgcagctgggatggatatttagttg
tatctttcctttggaaatatacatgacaattgttggtaacataaaagcta
gtcctcagagaggagattttcagtcatatctagcccagggcttctgggtc
ccacatcagaagtatacagtttcttcaacaagaggtactgacctaccttt
tatgccaacccagggaaatagcaatagtctgtcttattttgggaatttct
tggataaccttggaccacagatcaaaaggttttgttatgccttccttttt
gaattttcattaagttaaaatctttttttgtttttgttttgttttgcttt
gttttgtttttttgagacaaggtttctctgtatagccctgactgtcctgg
atctcactttgtagaccaggctggcctcaaacttagaaatccatctgcct
ctgcctctcaagtgctgggattaaaggtgtgtgacaccatgaccatctaa
gtgaaaatctttaaagtgatctttagtattaagagagagccttatatgtt
cacatgggaaatttcaatgaaaaaatatatttataccacaaaataattct
tttgggggtagtaaataattcatagtatgaaaacactggagttaggagtt
agaaagactccttgataggcggacagagatagggactatggttaaggaat
aaaggtgacaaatttccagtatgtccacctaattcttaccctctggactt
gtggcaaaagtctaggatatctgattcatatattagattcatttttaact
tcttcagagtttagaatccaaaagcaaattaaggaaccctatattctaca
acatttcagcatcatttgtgtcagttcttttgttgatatatattcttttt
gaatggtaagaagaaattcaaattttccttttctttttttcctgaattgg
taggacaaaacaacaaagaaaacaa

gaattcctacacatgcatttttatcagtctacattcacagtagttgagat
gtgaattagcctaactgtccatctacagataaaggaaaagacagtgttgt
gcctattacataattgattgttactttccattatatgtgaaattatgtca
cttgcagaaaaatggatgacattggagattatcatgttgagttaaagcaa
tctggtcatagaaagaaagaaacaaggtttttatatgcaatttctagatt
aaaattataattatgagaatatttaggacaatttggatgaggtaccttat
gagagagggaaaaaggggggtaagaaaggatggtgagatgaatttgatca
aaatacggaaaaggggtgtatgaaaaataacatattaaactcagctttcc
acaatttacatgcagaaaatctcctaagaacaaatgttatttccctttaa
attgttcagaaagtactcaaaagtaaataaaccattaaaagcaatattgt
agtagagagtaatctggactcataaagcaatacattgcatgggcacattg
taagatgagcatctgccaagcctctgtggagttatattctattctcttag
agacctgcatgcatgtcattgttttcgttcatttgtctgtctgtttgttt
gtttgtttgtttgcgggggtgggggatttgacacagtccttgaacttggc
aatcctattaacttgaacatatattttttctatatttgtttgtgggaata
tatatatattaaaaatagacaattattaaagaaagaatggaaaataaaaa
attgaaagtagagtattttttataccctgagaaaataaaatatcactttg
taatatttcctaatgcttgtctacatttctgtagacactcaatttgaaaa
attaacttctaaagggaatttgttgcttaaagaccagcacacttttgtct
ttgactatgctattcacaggttcctgatagtctatctatactcattgcta
gggatatttataagcatttgacgcttataggtatagaccaatttagacct
ctcttagagaaaaaaaaatccctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_104500537_104501618
seq2: B6Ng01-344L05.b_51_1125

seq1  GAATTCCTTCCTGTTGATGTGTCTTATGCCCAATTTGAGAGCTATTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCTGTTGATGTGTCTTATGCCCAATTTGAGAGCTATTGGTT  50

seq1  ATCAACGAGGTATGTATGCCACCACTGCTCCTTTAGGGTTATTATGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACGAGGTATGTATGCCACCACTGCTCCTTTAGGGTTATTATGCCAT  100

seq1  GCCGGTCAGTGTAGTTCATGCATATTGCAGCTGGGATGGATATTTAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGTCAGTGTAGTTCATGCATATTGCAGCTGGGATGGATATTTAGTTG  150

seq1  TATCTTTCCTTTGGAAATATACATGACAATTGTTGGTAACATAAAAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCCTTTGGAAATATACATGACAATTGTTGGTAACATAAAAGCTA  200

seq1  GTCCTCAGAGAGGAGATTTTCAGTCATATCTAGCCCAGGGCTTCTGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGAGAGGAGATTTTCAGTCATATCTAGCCCAGGGCTTCTGGGTC  250

seq1  CCACATCAGAAGTATACAGTTTCTTCAACAAGAGGTACTGACCTACCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCAGAAGTATACAGTTTCTTCAACAAGAGGTACTGACCTACCTTT  300

seq1  TATGCCAACCCAGGGAAATAGCAATAGTCTGTCTTATTTTGGGAATTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAACCCAGGGAAATAGCAATAGTCTGTCTTATTTTGGGAATTTCT  350

seq1  TGGATAACCTTGGACCACAGATCAAAAGGTTTTGTTATGCCTTCCTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAACCTTGGACCACAGATCAAAAGGTTTTGTTATGCCTTCCTTTTT  400

seq1  GAATTTTCATTAAGTTAAAATCTTTTTTTGTTTTTGTTTTGTTTTGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTCATTAAGTTAAAATCTTTTTTTGTTTTTGTTTTGTTTTGCTTT  450

seq1  GTTTTGTTTTTTTGAGACAAGGTTTCTCTGTATAGCCCTGACTGTCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTTTTGAGACAAGGTTTCTCTGTATAGCCCTGACTGTCCTGG  500

seq1  ATCTCACTTTGTAGACCAGGCTGGCCTCAAACTTAGAAATCCATCTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACTTTGTAGACCAGGCTGGCCTCAAACTTAGAAATCCATCTGCCT  550

seq1  CTGCCTCTCAAGTGCTGGGATTAAAGGTGTGTGACACCATGACCATCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTCAAGTGCTGGGATTAAAGGTGTGTGACACCATGACCATCTAA  600

seq1  GTGAAAATCTTTAAAGTGATCTTTAGTATTAAGAGAGAGCCTTATATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATCTTTAAAGTGATCTTTAGTATTAAGAGAGAGCCTTATATGTT  650

seq1  CACATGGGAAATTTCAATGAAAAAATATATTTATACCACAAAATAATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGAAATTTCAATGAAAAAATATATTTATACCACAAAATAATTCT  700

seq1  TTTGGGGGTAGTAAATAATTCATAGTATGAAAACACTGGAGTTAGGAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGTAGTAAATAATTCATAGTATGAAAACACTGGAGTTAGGAGTT  750

seq1  AGAAAGACTCCTTGATAGGCGGACAGAGATAGGGACTATGGTTAAGGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACTCCTTGATAGGCGGACAGAGATAGGGACTATGGTTAAGGAAT  800

seq1  AAAGGTGACAAATTTCCAGTATGTCCACCTAATTCTTACCCTCTGGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGACAAATTTCCAGTATGTCCACCTAATTCTTACCCTCTGGACTT  850

seq1  GTGGCAAAAGTCTAGGATATCTGATTCATATATTAGATTCATTTTTAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAAAGTCTAGGATATCTGATTCATATATTAGATTCATTTTTAACT  900

seq1  TCTTCAGAGTTTAGAATCCAAAAGCAAATTAAGGAACCCTATATTCTACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGAGTTTAGAATCCAAAAGCAAATTAAGGAACCCTATATTCTACA  950

seq1  ACATTTCAGCATCATTTGTTGTCAGTTCTTTTGTTGATATATATTCTTTT  1000
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACATTTCAGCATCATTTG-TGTCAGTTCTTTTGTTGATATATATTCTTTT  999

seq1  TGAATGGTTAAGAAGAAATTCAAAATTTTCCTTTTCTTTTTTTCCTGAAT  1050
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  TGAATGG-TAAGAAGAAATTC-AAATTTTCCTTTTCTTTTTTTCCTGAAT  1047

seq1  TGGTAGGACAAAAACAAAACAAAAGAAAACAA  1082
      ||||||||| |||||||    |||||||||||
seq2  TGGTAGGAC-AAAACAA---CAAAGAAAACAA  1075


seq1: chr8_104678861_104679939
seq2: B6Ng01-344L05.g_68_1142 (reverse)

seq1  ATAGGGATTTTTTTTTTCCTCTAAGAGAGGTCTAAATTGGTTCTATTACC  50
      ||||||||||||||||  |||||||||||||||||||||| |||| ||||
seq2  ATAGGGATTTTTTTTT--CTCTAAGAGAGGTCTAAATTGG-TCTA-TACC  46

seq1  TAATAAGCGTCAAATGCTTATTAAATATCCCTAGCAATGAGTTATAGGAT  100
      | |||||||||||||||||| |||||||||||||||||||| |||| |||
seq2  T-ATAAGCGTCAAATGCTTA-TAAATATCCCTAGCAATGAG-TATA-GAT  92

seq1  AGACTATCAGGAA-CTGTGAATAGCATAGTCAAAGACAAAAGTGTGCTGG  149
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGACTATCAGGAACCTGTGAATAGCATAGTCAAAGACAAAAGTGTGCTGG  142

seq1  TCTTTTAGGCAACAAATT-CCTTTAG-AGTTAATTTTTCAAATTGAGTGT  197
      || |||| |||||||||| ||||||| |||||||||||||||||||||||
seq2  TC-TTTAAGCAACAAATTCCCTTTAGAAGTTAATTTTTCAAATTGAGTGT  191

seq1  CTTACAGAAATGTAGACAAGCATTAGGAAATATTAC-AAGTGATATTTTA  246
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  C-TACAGAAATGTAGACAAGCATTAGGAAATATTACAAAGTGATATTTTA  240

seq1  TTTTCTCA-GGTAT-AAAAATACTCTACTTTCAATTTTTTATTTTCCATT  294
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAGGGTATAAAAAATACTCTACTTTCAATTTTTTATTTTCCATT  290

seq1  CTTTCTTTAATAATTGTCTATTTTTAATATATATATATTCCCACAAACAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTAATAATTGTCTATTTTTAATATATATATATTCCCACAAACAA  340

seq1  ATATAGAAAAAATATATGTTCAAGTTAATAGGATTGCCAAGTTCAAGGAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAAAAAATATATGTTCAAGTTAATAGGATTGCCAAGTTCAAGGAC  390

seq1  TGTGTCAAATCCCCCACCCCCGCAAACAAACAAACAAACAAACAGACAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAAATCCCCCACCCCCGCAAACAAACAAACAAACAAACAGACAGA  440

seq1  CAAATGAACGAAAACAATGACATGCATGCAGGTCTCTAAGAGAATAGAAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAACGAAAACAATGACATGCATGCAGGTCTCTAAGAGAATAGAAT  490

seq1  ATAACTCCACAGAGGCTTGGCAGATGCTCATCTTACAATGTGCCCATGCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCCACAGAGGCTTGGCAGATGCTCATCTTACAATGTGCCCATGCA  540

seq1  ATGTATTGCTTTATGAGTCCAGATTACTCTCTACTACAATATTGCTTTTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTGCTTTATGAGTCCAGATTACTCTCTACTACAATATTGCTTTTA  590

seq1  ATGGTTTATTTACTTTTGAGTACTTTCTGAACAATTTAAAGGGAAATAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTATTTACTTTTGAGTACTTTCTGAACAATTTAAAGGGAAATAAC  640

seq1  ATTTGTTCTTAGGAGATTTTCTGCATGTAAATTGTGGAAAGCTGAGTTTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCTTAGGAGATTTTCTGCATGTAAATTGTGGAAAGCTGAGTTTA  690

seq1  ATATGTTATTTTTCATACACCCCTTTTCCGTATTTTGATCAAATTCATCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTATTTTTCATACACCCCTTTTCCGTATTTTGATCAAATTCATCT  740

seq1  CACCATCCTTTCTTACCCCCCTTTTTCCCTCTCTCATAAGGTACCTCATC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCCTTTCTTACCCCCCTTTTTCCCTCTCTCATAAGGTACCTCATC  790

seq1  CAAATTGTCCTAAATATTCTCATAATTATAATTTTAATCTAGAAATTGCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGTCCTAAATATTCTCATAATTATAATTTTAATCTAGAAATTGCA  840

seq1  TATAAAAACCTTGTTTCTTTCTTTCTATGACCAGATTGCTTTAACTCAAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAACCTTGTTTCTTTCTTTCTATGACCAGATTGCTTTAACTCAAC  890

seq1  ATGATAATCTCCAATGTCATCCATTTTTCTGCAAGTGACATAATTTCACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATCTCCAATGTCATCCATTTTTCTGCAAGTGACATAATTTCACA  940

seq1  TATAATGGAAAGTAACAATCAATTATGTAATAGGCACAACACTGTCTTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGGAAAGTAACAATCAATTATGTAATAGGCACAACACTGTCTTTT  990

seq1  CCTTTATCTGTAGATGGACAGTTAGGCTAATTCACATCTCAACTACTGTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATCTGTAGATGGACAGTTAGGCTAATTCACATCTCAACTACTGTG  1040

seq1  AATGTAGACTGATAAAAATGCATGTGTAGGAATTC  1079
      |||||||||||||||||||||||||||||||||||
seq2  AATGTAGACTGATAAAAATGCATGTGTAGGAATTC  1075


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