BAC Information

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BAC

Clone NameB6Ng01-347N07
Chromosome11 (Build37)8 (Build37)
Map Location 57,778,791 - 57,779,34690,459,310 - 90,460,451
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605
Downstream geneLarp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347N07.bB6Ng01-347N07.g
ACCGA129314GA129315
length2861,120
definitionB6Ng01-347N07.b B6Ng01-347N07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(57,778,791 - 57,779,346)(90,459,310 - 90,460,451)
sequence
caggacagccagggctacacagagaaaacctgtcttaagaaaactataag
caaatgaatgaatgaatgaatgaatgaatgaacgaacaaataaataaagt
tgtgagctgcctaaggtgagtgttgggaactgaactctgatcccctgcaa
gagcaatacatgctcttaagcactgagccatgcctctgaccccactgatt
tgtctttaaagtctttcccccactttattcttatgtagtgtgtatgggtg
ttttgcctgcttctattctgtgtaccatgtgtttgc
gaattcagccaccaaaggcaggagcagatgttctgagccagagagatgac
tcagtgggtaagagtgatcactcactcgcttgccaccacacctggtgaca
gaagcctatgtcatggaaggaaagaactgattcctacagaggtttccaca
ggctcaccatggaatacacacgggtgtgcaacacacaccacactaaataa
aagatagatagatagatagatagatagacagacagacagatagatagaca
aacagataggtagatagatgtgggttttttctttccttttcttttctttt
ttttttttttccttcaaacaaaaaaaccccaagtttcacaggaaatttct
acagagagataatctgttgctcaggcaagaggctacagtcagcagacagc
tatgccctccccacaagcctggtcccctccctccccacaagcctcaggac
ccttgccaagcaggaaagtgggtctcatggtccggggaccaggtccatcc
actaggtcctagaaaaagaagccacggactggagagataattcagcggtt
aagagcactgactgctcttctgaaggtcctaagttcaaatcccagcaacc
acatgatggctcacaaccatctgtaacaagatctgaccccttcttctgta
aagacaactacattgtagatataataataataataagtaagtctttaaaa
aagaaaaagaaaaagaagctacaattatcatcagcttttcccatgctggt
ttctttcttccagagacagtgcaggagctagaaagatgtctgagcgattt
agagtacttgctctcttgtacagggtagggctcaattctgtatgatggtt
cacagccatccacaactttagttccagaggatccaaggccctttctgtat
tctgggggcaccaggcacacacatggtacacatacatacatataggcaat
actcatacacataaaatagattttaaaattttttaaagagaaagatagtg
cagcatcagatagctatgagcaggtgtggcgtgcacctgtactctgcctg
catgtctcaaaaaaattaattaaataaaatcgtggcgaactcatgctcag
cctcagtttgcatctgcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_57778791_57779346
seq2: B6Ng01-347N07.b_56_340 (reverse)

seq1  GCAAACACAATGTGTTTGTAACTCCAGTTACACAATGTCTGTAACTCCAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCCCAGGGGATCCAATTCTCTCTCTGCCCTCCAAGGGAAACAGGCAGTCG  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGAAATACCCAGACCCCCTGAGTTCATGGACAGCCTGGTCTACGGAGTGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTCAGGACAGCTAGGGTTACACAGAGAAACACTGCCTCAGAGGAGGGG  200
                                                      | 
seq2  ------------------------------------------------GC  2

seq1  AAAAAAA--GTATACAGTCTA----CAGGCAAAACACCCATATGAGTAAA  244
      ||| | |  ||| ||||  ||    |||||||||||||||||  |    |
seq2  AAACACATGGTACACAGAATAGAAGCAGGCAAAACACCCATA-CACACTA  51

seq1  AACAAAAATAAAGTATTGATTCTGAGACTAGAAATATAGCTCAATAG---  291
       | || |||||||   ||      |||||  ||| | |  ||| | |   
seq2  CATAAGAATAAAG---TGGGGGAAAGACTTTAAAGACAAATCAGTGGGGT  98

seq1  CAGAGTATTTGCCCTGTATGCATGGGGACCTAGGTTCATCTTCAACTTTG  341
      |||||              ||||||    ||  || | |           
seq2  CAGAG--------------GCATGG----CTCAGTGCTT-----------  119

seq1  AAAAAAAAATGCATTTATTTATGTATCACATGATATGTG----GTTCTCG  387
            ||  |||| ||||  | |  ||   |||  | |    |||| | 
seq2  ------AAGAGCATGTATTGCTCTTGCAGGGGATCAGAGTTCAGTTCCCA  163

seq1  CCTCCCACCGTGTGGATCCTGGGGATGGTGCCAGGTTGTCCTCAAGCTTA  437
       | | |||| |                     |||  |  | |||  |||
seq2  ACACTCACCTT---------------------AGGCAGCTCACAACTTTA  192

seq1  GCAGCAGGTGCTCTACTGTGTGAGCCTGTCCTAAAGAAGGGCACTGTGAC  487
                 | || | |||       || |  |      ||   |   
seq2  -----------TTTA-TTTGT-------TCGTTCATTCATTCA---TTCA  220

seq1  TTGGTTTGTTTATTTGCTTGCTTGGTTGGTTTTTGAGACAGGGTTTCTCT  537
      ||  ||  || ||||||||   | |||  || || ||||||| |||||||
seq2  TTCATTCATTCATTTGCTT--ATAGTT--TTCTTAAGACAGGTTTTCTCT  266

seq1  GTGTAGCCCTGGCTGTCCT  556
      |||||||||||||||||||
seq2  GTGTAGCCCTGGCTGTCCT  285

seq1: chr8_90459310_90460451
seq2: B6Ng01-347N07.g_69_1188

seq1  GAATTCAGCCACCAAAGGCAGGAGCAGATGTTCTGAGCCAGAGAGATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCACCAAAGGCAGGAGCAGATGTTCTGAGCCAGAGAGATGAC  50

seq1  TCAGTGGGTAAGAGTGATCACTCACTCGCTTGCCACCACACCTGGTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGTAAGAGTGATCACTCACTCGCTTGCCACCACACCTGGTGACA  100

seq1  GAAGCCTATGTCATGGAAGGAAAGAACTGATTCCTACAGAGGTTTCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTATGTCATGGAAGGAAAGAACTGATTCCTACAGAGGTTTCCACA  150

seq1  GGCTCACCATGGAATACACACGGGTGTGCAACACACACCACACTAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACCATGGAATACACACGGGTGTGCAACACACACCACACTAAATAA  200

seq1  AAGATAGATAGATAGATAGATAGATAGACAGACAGACAGATAGATAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGATAGATAGATAGATAGATAGACAGACAGACAGATAGATAGACA  250

seq1  AACAGATAGGTAGATAGATGTGGGTTTTTTCTTTCCTTTTCTTTTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATAGGTAGATAGATGTGGGTTTTTTCTTTCCTTTTCTTTTCTTTT  300

seq1  TTTTTTTTTTCCTTCAAACAAAAAAACCCCAAGTTTCACAGGAAATTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCCTTCAAACAAAAAAACCCCAAGTTTCACAGGAAATTTCT  350

seq1  ACAGAGAGATAATCTGTTGCTCAGGCAAGAGGCTACAGTCAGCAGACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGATAATCTGTTGCTCAGGCAAGAGGCTACAGTCAGCAGACAGC  400

seq1  TATGCCCTCCCCACAAGCCTGGTCCCCTCCCTCCCCACAAGCCTCAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCTCCCCACAAGCCTGGTCCCCTCCCTCCCCACAAGCCTCAGGAC  450

seq1  CCTTGCCAAGCAGGAAAGTGGGTCTCATGGTCCGGGGACCAGGTCCATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCAAGCAGGAAAGTGGGTCTCATGGTCCGGGGACCAGGTCCATCC  500

seq1  ACTAGGTCCTAGAAAAAGAAGCCACGGACTGGAGAGATAATTCAGCGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTCCTAGAAAAAGAAGCCACGGACTGGAGAGATAATTCAGCGGTT  550

seq1  AAGAGCACTGACTGCTCTTCTGAAGGTCCTAAGTTCAAATCCCAGCAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACTGACTGCTCTTCTGAAGGTCCTAAGTTCAAATCCCAGCAACC  600

seq1  ACATGATGGCTCACAACCATCTGTAACAAGATCTGACCCCTTCTTCTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATGGCTCACAACCATCTGTAACAAGATCTGACCCCTTCTTCTGTA  650

seq1  AAGACAACTACATTGTAGATATAATAATAATAATAAGTAAGTCTTTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAACTACATTGTAGATATAATAATAATAATAAGTAAGTCTTTAAAA  700

seq1  AAGAAAAAGAAAAAGAAGCTACAATTATCATCAGCTTTTCCCATGCTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGAAAAAGAAGCTACAATTATCATCAGCTTTTCCCATGCTGGT  750

seq1  TTCTTTCTTCCAGAGACAGTGCAGGAGCTAGAAAGATGTCTGAGCGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTCCAGAGACAGTGCAGGAGCTAGAAAGATGTCTGAGCGATTT  800

seq1  AGAGTACTTGCTCTCTTGTACAGGGTAGGGCTCAATTCTGTATGATGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTTGCTCTCTTGTACAGGGTAGGGCTCAATTCTGTATGATGGTT  850

seq1  CACAGCCATCCACAACTTTAGTTCCAGAGGATCCAAGGCCCTTTCTGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCATCCACAACTTTAGTTCCAGAGGATCCAAGGCCCTTTCTGTAT  900

seq1  TCTGGGGGCACCAGGCACACACATGGTACACATACATACATATAGGCAAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  TCTGGGGGCACCAGGCACACACATGGTACACATACATACATATAGGC--A  948

seq1  ATACTCATACACATAAAATAGATTTTAAAATTTTTTAAAAGAGAAAAGAT  1000
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  ATACTCATACACATAAAATAGATTTTAAAATTTTTT-AAAGAG-AAAGAT  996

seq1  AGTGCAAGCCAATCAGGATAGCTATGAGCAGGTGGTTGGCGTGCACCTGT  1050
      ||||| |||  |||| ||||||||||||||||||  ||||||||||||||
seq2  AGTGC-AGC--ATCA-GATAGCTATGAGCAGGTG--TGGCGTGCACCTGT  1040

seq1  AACCTCTGCCCCTGCATGTCTCAAAAAAAAATTAAAATTAAAAATTAGAA  1100
      |  |||||  ||||||||||||  |||||||||  ||||||     | ||
seq2  A--CTCTG--CCTGCATGTCTC--AAAAAAATT--AATTAA-----ATAA  1077

seq1  AATCCGTGGGCGACCCTCATGCTCAGGCCTCCAGTCTGCATC------  1142
      ||| ||| |||||  |||||||||| |||| |||| ||||||      
seq2  AAT-CGT-GGCGA-ACTCATGCTCA-GCCT-CAGTTTGCATCTGCATC  1120