BAC Information

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BAC

Clone NameB6Ng01-350P15
Chromosome8 (Build37)
Map Location 109,160,840 - 109,288,204
singlet/doubletdoublet
Overlap geneCdh1, Tmco7
Upstream geneLOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734
Downstream geneHas3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350P15.bB6Ng01-350P15.g
ACCGA131490GA131491
length1,2061,120
definitionB6Ng01-350P15.b B6Ng01-350P15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,287,005 - 109,288,204)(109,160,840 - 109,161,968)
sequence
gaattccccaaagagacaacccacctcataggtacaaacataaaactgca
cttcaaaatgttctaattaattttcttaccaagagagaaccagaagtctc
attttaaaattgcctatttatgtatttacctactaggtgcctttcttatt
aatatctaggaactccttatgtgataaaggtattaactgcttgccttttg
gtaagagaaagaggttcactgtgataaagctatgacataatccatgtcat
tctatatgcataactatgtgctttttaggagactcacaagccttgtgcaa
ccatcgctctgttaactgtgtaacatcttcatggctccaaaagggaggct
ccccctcctttgccactttcccttttcatcctgagcctcagagactgcag
atacatcttctatctcaatacacttacacccaaaagccgttttcctagga
aatctttggttgttgactttgcattaaattaaaactatgttggcttttgg
acacaaatgtgttttaagaccttaggaggtcaaatcttttcggctttctt
cctgatttctctgcctagaaatattttctgtgctcatttcctgtaatttt
tttcccttttggttcattaattctctccctggttgtgtttgtctttgttt
agttactctttgttttgagatgttcccttaaaaacaaagtttgatggttt
gtttgggtttttgttgttgttgtttctcacttcctaatgttattgtcaag
tttatcctgtatttctttaaatacagtaagcagaattatttcttcatttg
tgagcaacaaatctagtatctgaagtagcactggaccttgtttttttgta
tttgattatgaacagctctgtgctagtgactgactttaagaattactgtg
gagggagaagtgggtgctactggaaatgggcagcagagttgtttgttttt
ggaggatgaaagtttaatgggtagttgatgacagctatacatacttatga
aaaaattagttgccaatgaaattgtgaaagggcttcaaggttgtcaattt
tatgttatagtccacacatgcataaaactcaattcctttaaaactaccac
aacaaaaaacaggtcttgcctagagagtctagattagcctacattcacgc
tcctctgccttacgtccagtggccaggaattcatgggtttcacacgtata
tatctc
gaattcttagaatgtacgtcccaaatggagataccttcccctcctcccct
ctgagggacacggcattgttgtggggcttattttctgagtaaattacctt
tccaggcaggctgtgtagggttagcaaacactcttggaagcagctgcctt
tcccatcaatgcttgcttgttttggataatgaaaaatgatgctagcatcc
attaaagaaaaagccgcctcttagaagcgctggtggacaagtgggtgctt
gtcacagagtcatctgctgatgcatgtgacctggagaacgagaaacggcc
tctctctgtgacttggactcctcgacattctttgggtctgtttaggagtt
ttgtttaaaggtcggaggcggagggtctccgctcctccggcacagcccac
atttggcaagagctcaggcctcgtgttcttcctctgtagaagaggttttc
acatctcattcttgagctactgaatgaaccgaatattctggatttccaat
ctcagcaactccagagcctgaggcagaagaacctcttgagcccaggagtt
aaaggccagcctgggcaacacaggctgtctgaaacaaaagttcttacttc
catggcaacttcccctgttctcacatgggctgtggcatttctgtattctt
ttgtgcttgggaagtgcggccctggattgatgagtgtttctggttggctg
gttctgttgactctgagctgcccccagcaagaaggtgatcagaagcccaa
cctcagctgggcacaatggtgcattcctttaaccgcagcacttgggaggc
agagaagcaagtggatcttcgtgagttcaaggccagcctgagttccaaga
gactatttcaaaaccccaaaagaaaatcagcttaaaaccaaaaaggagag
gccggagagatggctcagccgttaagagcaccattctgctcttccggagg
tcctgagttcaatcccagcaccacatagtggctcacaccatctgtaatga
gatcagatgccctctccggtggtgtctgaagacagctacagtattacctc
acatatataataataatctttgaaaacaccaacaaccacaaacaggagct
tggccatgtggtgtatcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109287005_109288204
seq2: B6Ng01-350P15.b_49_1254 (reverse)

seq1  GAGATAT-TA-GTGTG-AACCCCTGAATTCCTGG-CACTTGGGACGTAGA  46
      ||||||| || ||||| ||||| ||||||||||| ||||  ||||||| |
seq2  GAGATATATACGTGTGAAACCCATGAATTCCTGGCCACT--GGACGTA-A  47

seq1  GGCAGGAGGAGCGTGAATTGTAAGCTAATCTAGACTCTCTA-GCAAGACC  95
      |||| |||||||||||| |||| |||||||||||||||||| |||||| |
seq2  GGCA-GAGGAGCGTGAA-TGTAGGCTAATCTAGACTCTCTAGGCAAGA-C  94

seq1  CTGTTTTTTGTTGTTGTTGTTTTTAATGTATTGTGTTTTTATGCATGTGT  145
      |||||||||||||| || ||||| || | |||| | ||||||||||||||
seq2  CTGTTTTTTGTTGTGGTAGTTTTAAAGGAATTGAG-TTTTATGCATGTGT  143

seq1  -GACTATAACATAAAATTTGACA--CTTG-AGCCTTTTTAACATTTCATT  191
       ||||||||||||||| ||||||  |||| |||| ||| |  ||||||||
seq2  GGACTATAACATAAAA-TTGACAACCTTGAAGCCCTTTCACAATTTCATT  192

seq1  GGC-ACTAATTTTTTCAT-AGTATTGTATAGCTGTCATC-ACTACCATTA  238
      ||| |||||||||||||| |||| ||||||||||||||| ||||||  | 
seq2  GGCAACTAATTTTTTCATAAGTA-TGTATAGCTGTCATCAACTACCCATT  241

seq1  AAACTTTCATCCTCC-AAAACAAAC-ACTCTGCTGCCCA-TTCCAGTAGC  285
      ||||||||||||||| ||||||||| ||||||||||||| ||||||||||
seq2  AAACTTTCATCCTCCAAAAACAAACAACTCTGCTGCCCATTTCCAGTAGC  291

seq1  ACCCACTTCTCCCTCCACAGTAATTCTTAAAGTCAGTCACTAGCACAGAG  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTTCTCCCTCCACAGTAATTCTTAAAGTCAGTCACTAGCACAGAG  341

seq1  CTGTTCATAATCAAATACAAAAAAACAAGGTCCAGTGCTACTTCAGATAC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATAATCAAATACAAAAAAACAAGGTCCAGTGCTACTTCAGATAC  391

seq1  TAGATTTGTTGCTCACAAATGAAGAAATAATTCTGCTTACTGTATTTAAA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTGTTGCTCACAAATGAAGAAATAATTCTGCTTACTGTATTTAAA  441

seq1  GAAATACAGGATAAACTTGACAATAACATTAGGAAGTGAGAAACAACAAC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACAGGATAAACTTGACAATAACATTAGGAAGTGAGAAACAACAAC  491

seq1  AACAAAAACCCAAACAAACCATCAAACTTTGTTTTTAAGGGAACATCTCA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACCCAAACAAACCATCAAACTTTGTTTTTAAGGGAACATCTCA  541

seq1  AAACAAAGAGTAACTAAACAAAGACAAACACAACCAGGGAGAGAATTAAT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGAGTAACTAAACAAAGACAAACACAACCAGGGAGAGAATTAAT  591

seq1  GAACCAAAAGGGAAAAAAATTACAGGAAATGAGCACAGAAAATATTTCTA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAAAGGGAAAAAAATTACAGGAAATGAGCACAGAAAATATTTCTA  641

seq1  GGCAGAGAAATCAGGAAGAAAGCCGAAAAGATTTGACCTCCTAAGGTCTT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAAATCAGGAAGAAAGCCGAAAAGATTTGACCTCCTAAGGTCTT  691

seq1  AAAACACATTTGTGTCCAAAAGCCAACATAGTTTTAATTTAATGCAAAGT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACATTTGTGTCCAAAAGCCAACATAGTTTTAATTTAATGCAAAGT  741

seq1  CAACAACCAAAGATTTCCTAGGAAAACGGCTTTTGGGTGTAAGTGTATTG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACCAAAGATTTCCTAGGAAAACGGCTTTTGGGTGTAAGTGTATTG  791

seq1  AGATAGAAGATGTATCTGCAGTCTCTGAGGCTCAGGATGAAAAGGGAAAG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAAGATGTATCTGCAGTCTCTGAGGCTCAGGATGAAAAGGGAAAG  841

seq1  TGGCAAAGGAGGGGGAGCCTCCCTTTTGGAGCCATGAAGATGTTACACAG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAGGAGGGGGAGCCTCCCTTTTGGAGCCATGAAGATGTTACACAG  891

seq1  TTAACAGAGCGATGGTTGCACAAGGCTTGTGAGTCTCCTAAAAAGCACAT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGAGCGATGGTTGCACAAGGCTTGTGAGTCTCCTAAAAAGCACAT  941

seq1  AGTTATGCATATAGAATGACATGGATTATGTCATAGCTTTATCACAGTGA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGCATATAGAATGACATGGATTATGTCATAGCTTTATCACAGTGA  991

seq1  ACCTCTTTCTCTTACCAAAAGGCAAGCAGTTAATACCTTTATCACATAAG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTTCTCTTACCAAAAGGCAAGCAGTTAATACCTTTATCACATAAG  1041

seq1  GAGTTCCTAGATATTAATAAGAAAGGCACCTAGTAGGTAAATACATAAAT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCTAGATATTAATAAGAAAGGCACCTAGTAGGTAAATACATAAAT  1091

seq1  AGGCAATTTTAAAATGAGACTTCTGGTTCTCTCTTGGTAAGAAAATTAAT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATTTTAAAATGAGACTTCTGGTTCTCTCTTGGTAAGAAAATTAAT  1141

seq1  TAGAACATTTTGAAGTGCAGTTTTATGTTTGTACCTATGAGGTGGGTTGT  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACATTTTGAAGTGCAGTTTTATGTTTGTACCTATGAGGTGGGTTGT  1191

seq1  CTCTTTGGGGAATTC  1200
      |||||||||||||||
seq2  CTCTTTGGGGAATTC  1206

seq1: chr8_109160840_109161968
seq2: B6Ng01-350P15.g_69_1188

seq1  GAATTCTTAGAATGTACGTCCCAAATGGAGATACCTTCCCCTCCTCCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAATGTACGTCCCAAATGGAGATACCTTCCCCTCCTCCCCT  50

seq1  CTGAGGGACACGGCATTGTTGTGGGGCTTATTTTCTGAGTAAATTACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGACACGGCATTGTTGTGGGGCTTATTTTCTGAGTAAATTACCTT  100

seq1  TCCAGGCAGGCTGTGTAGGGTTAGCAAACACTCTTGGAAGCAGCTGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCAGGCTGTGTAGGGTTAGCAAACACTCTTGGAAGCAGCTGCCTT  150

seq1  TCCCATCAATGCTTGCTTGTTTTGGATAATGAAAAATGATGCTAGCATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCAATGCTTGCTTGTTTTGGATAATGAAAAATGATGCTAGCATCC  200

seq1  ATTAAAGAAAAAGCCGCCTCTTAGAAGCGCTGGTGGACAAGTGGGTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGAAAAAGCCGCCTCTTAGAAGCGCTGGTGGACAAGTGGGTGCTT  250

seq1  GTCACAGAGTCATCTGCTGATGCATGTGACCTGGAGAACGAGAAACGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGAGTCATCTGCTGATGCATGTGACCTGGAGAACGAGAAACGGCC  300

seq1  TCTCTCTGTGACTTGGACTCCTCGACATTCTTTGGGTCTGTTTAGGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTGACTTGGACTCCTCGACATTCTTTGGGTCTGTTTAGGAGTT  350

seq1  TTGTTTAAAGGTCGGAGGCGGAGGGTCTCCGCTCCTCCGGCACAGCCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAAGGTCGGAGGCGGAGGGTCTCCGCTCCTCCGGCACAGCCCAC  400

seq1  ATTTGGCAAGAGCTCAGGCCTCGTGTTCTTCCTCTGTAGAAGAGGTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCAAGAGCTCAGGCCTCGTGTTCTTCCTCTGTAGAAGAGGTTTTC  450

seq1  ACATCTCATTCTTGAGCTACTGAATGAACCGAATATTCTGGATTTCCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCATTCTTGAGCTACTGAATGAACCGAATATTCTGGATTTCCAAT  500

seq1  CTCAGCAACTCCAGAGCCTGAGGCAGAAGAACCTCTTGAGCCCAGGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAACTCCAGAGCCTGAGGCAGAAGAACCTCTTGAGCCCAGGAGTT  550

seq1  AAAGGCCAGCCTGGGCAACACAGGCTGTCTGAAACAAAAGTTCTTACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAGCCTGGGCAACACAGGCTGTCTGAAACAAAAGTTCTTACTTC  600

seq1  CATGGCAACTTCCCCTGTTCTCACATGGGCTGTGGCATTTCTGTATTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAACTTCCCCTGTTCTCACATGGGCTGTGGCATTTCTGTATTCTT  650

seq1  TTGTGCTTGGGAAGTGCGGCCCTGGATTGATGAGTGTTTCTGGTTGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTGGGAAGTGCGGCCCTGGATTGATGAGTGTTTCTGGTTGGCTG  700

seq1  GTTCTGTTGACTCTGAGCTGCCCCCAGCAAGAAGGTGATCAGAAGCCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTTGACTCTGAGCTGCCCCCAGCAAGAAGGTGATCAGAAGCCCAA  750

seq1  CCTCAGCTGGGCACAATGGTGCATTCCTTTAACCGCAGCACTTGGGAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTGGGCACAATGGTGCATTCCTTTAACCGCAGCACTTGGGAGGC  800

seq1  AGAGAAGCAAGTGGATCTTCGTGAGTTCAAGGCCAGCCTGAGTTCCAAAG  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGAGAAGCAAGTGGATCTTCGTGAGTTCAAGGCCAGCCTGAGTTCC-AAG  849

seq1  AGACTATTTCAAAACCCCAAAAGAAAATCAGCTTAAAACCAAAAA-GAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGACTATTTCAAAACCCCAAAAGAAAATCAGCTTAAAACCAAAAAGGAGA  899

seq1  GGCCGGAGAGATGGCTCAGCCGTTAAGAGCACCA-TCTGCTCTTCCGGAG  948
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGCCGGAGAGATGGCTCAGCCGTTAAGAGCACCATTCTGCTCTTCCGGAG  949

seq1  GTCCTGAGTTCAAATCCCAGCAACCACATAGTGGCTCACAACCATCTGTA  998
      ||||||||||| ||||||||| ||||||||||||||||| ||||||||||
seq2  GTCCTGAGTTC-AATCCCAGC-ACCACATAGTGGCTCAC-ACCATCTGTA  996

seq1  ATGAGATCAGATGCCCTCTTCCGGT-GTGTCTGAAGACAGCTACAGTAT-  1046
      |||||||||||||||||| |||||| ||||||||||||||||||||||| 
seq2  ATGAGATCAGATGCCCTC-TCCGGTGGTGTCTGAAGACAGCTACAGTATT  1045

seq1  -ACTCACATATAATAAATAAATAAATCTTTAAAAAACAAACAAACAAACA  1095
        ||||||||||   |||||   ||||||| |||   | || ||||| | 
seq2  ACCTCACATATA--TAATAA--TAATCTTTGAAA---ACACCAACAACC-  1087

seq1  AACAAACAGGAGCCTGGCATGGTGGTGTATCCTT  1129
       |||||||||||| ||||   |||||||||||||
seq2  -ACAAACAGGAGCTTGGCCATGTGGTGTATCCTT  1120