BAC Information

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BAC

Clone NameMSMg01-045A10
Chromosome8 (Build37)
Map Location 34,036,270 - 34,036,639
singlet/doubletsinglet
Overlap geneLOC100042715
Upstream gene2010007E15Rik, EG666589, EG546052
Downstream geneLOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045A10.T7 (MSMg01no045_a10.b1)MSMg01-045A10.TJ (MSMg01no045_a10.g1)
ACCAG275761AG275762
length744769
length of high quality
(start - end)
370 (126 - 495)392 (149 - 540)
definitionCHROMAT_FILE: MSMg01no045_a10.b1 PHD_FILE: MSMg01no045_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:04:52 2005CHROMAT_FILE: MSMg01no045_a10.g1 PHD_FILE: MSMg01no045_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:04:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGGGGAGGGGNNNNNNNNNNNCNNNCNNNNNNNNNNTNCNTTTTAAAA
ANNNNCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGACC
GCGGAATTCTATTTATTTCTCATTAGGGAGCTGACTGTATGCAGGATGAT
ACGTGCATATAAGGAATTCTCCACAATAATAATGAGAACTATAAACCGGT
GACAAGGAAAACTATTCCAAACTTGTTAATGAAAAGAGTAAGTAAGGAAT
GATGGGTGTGATACTCTCCTGTGTACATTCCAAAGGCTGCATATAGATGC
TTAACTGTAAGGAGAATTTTCTAATATTTGAGAAGAACTTACCTTAGGCC
AGTATCTTTAAATTAAATTAAAGTTGCTCAGAAATGAGCTATTAGACTTA
AGATATTATTGCACTGTAAATTCGTTGGGAAATTTAATTATGGAAACTAA
CAGCAAAGAGAGATTAGACAGTTTGTACAATTATTCACTTAGTAATATTC
CAAAAGGAAAAGTATTTATGTAATAATGCAAGTTGAGGTACTTCTAGAAC
TGACCTCACACACACTCACTCATACTCACTCACAGAATTCCAGATACTAA
TATCTAAATTTATAGTTTTCATAAATATCACCCATTCAATAACACAGGAC
AAATTCTTAAAATCTATACCTCAAACGGATGGAATTCCTCTCACAGTCAA
AAGGCTTTGTGAAACAGTGCCTAATAATTTTCCTTCCCTCAAAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAAAACACANNNCTCGATGAXXXXXXXXXXXXX
XXXXXXXXXXXTTTCACAAAAGAGGTGACCTATAGAATTTCCGCGAAATT
CTTTCTCATAAGACAAGAGCACATGTAAGATTGAGAATCGACAAATGGGA
CCTCATAAAATTGCAAAGCTTCTGTAAGGCAAAGGACACTGTCAAAAAGA
CAAAAAGGCCACCAACAGATTGGAAAAAGATCTTTACCAATCCTAATCTT
ATAGGGGGCTAATATCCAATATATACAAATAACTCAAGAAGTTAGGCTCC
AGAGAAACAAATAACCATATTAAAAATGGGGTACAGAGCTAAACAAAGAA
CCATTAACTAAGGAATACAGAATGGCTGAGGAGCACTTAAAAAAATGTTC
AACATCCTTAGTCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCT
ATCTCACACCTGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAAA
TGCTGACTAGGATGCGAATAAAGAGTAACACTTCTCCATTGCTGGTGGGA
TTGCAAGCTGGTATAACCACTCTGAAAATCAATCTATTGGTTCAACAGAA
TATAAAGACATAGTACTTCCTGGAGGAACCAGCAATATCTCTCATGGTGC
TTTTACCCACAATATGCTCCCATATGCAACAAGGAAACTTGTTCCCACTA
TGTTCCTAGCACCCCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_a10.b1 MSMg01no045_a10.b1 CHROMAT_FILE:
MSMg01no045_a10.b1 PHD_FILE: MSMg01no045_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:04:52 2005
         (370 letters)



>mm_chr8_34036070_34036839
          Length = 770

 Score =  716 bits (370), Expect = 0.0
 Identities = 370/370 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggagctgactgtatgcaggatgatacgtgcatataaggaattctccacaataataatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggagctgactgtatgcaggatgatacgtgcatataaggaattctccacaataataatga 260

                                                                       
Query: 61  gaactataaaccggtgacaaggaaaactattccaaacttgttaatgaaaagagtaagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaactataaaccggtgacaaggaaaactattccaaacttgttaatgaaaagagtaagtaa 320

                                                                       
Query: 121 ggaatgatgggtgtgatactctcctgtgtacattccaaaggctgcatatagatgcttaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaatgatgggtgtgatactctcctgtgtacattccaaaggctgcatatagatgcttaac 380

                                                                       
Query: 181 tgtaaggagaattttctaatatttgagaagaacttaccttaggccagtatctttaaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaaggagaattttctaatatttgagaagaacttaccttaggccagtatctttaaatta 440

                                                                       
Query: 241 aattaaagttgctcagaaatgagctattagacttaagatattattgcactgtaaattcgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattaaagttgctcagaaatgagctattagacttaagatattattgcactgtaaattcgt 500

                                                                       
Query: 301 tgggaaatttaattatggaaactaacagcaaagagagattagacagtttgtacaattatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggaaatttaattatggaaactaacagcaaagagagattagacagtttgtacaattatt 560

                     
Query: 361 cacttagtaa 370
           ||||||||||
Sbjct: 561 cacttagtaa 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)