BAC Information

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BAC

Clone NameMSMg01-045D05
Chromosome8 (Build37)
Map Location 94,539,907 - 94,540,524
singlet/doubletsinglet
Overlap genenone
Upstream geneChd9, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l, AJ237917, LOC100041254, LOC674324, LOC100040628, Irx3
Downstream gene4933436C20Rik, Irx5, Irx6, LOC100041325, Mmp2, Aytl1, Capns2, LOC100040752, Slc6a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045D05.T7 (MSMg01no045_d05.b1)MSMg01-045D05.TJ (MSMg01no045_d05.g1)
ACCAG275892AG275893
length1,446690
length of high quality
(start - end)
---618 (73 - 690)
definitionCHROMAT_FILE: MSMg01no045_d05.b1 PHD_FILE: MSMg01no045_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:06 2005CHROMAT_FILE: MSMg01no045_d05.g1 PHD_FILE: MSMg01no045_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACAATTCTCTGTCTACTTCATNATACTCACTACCTCCACGACACTTTCTT
AACAACTTAATACTGGATAGTGCTCGGACTCGTGCACTCTTCGATCTCGT
ATGAAACACAGCGATAGACGAGGCACATAACTTAATTAAATAAATCATAC
GCCAGCCATACACACACCACACTCATAGACTGCGGCGTTGTTGCGTGTGT
TGTCACAGGCTGCATTGCGAGGCTCACACCTTGTCTACGTGTGCCGTCCC
ATATGAGTTGCCAGCAGTGAGAGCTCTAGACAGACAAACTAAACGAACTA
CCATACCACTGTAGAGANAAGTACTAATAACATAACATACAACTCGGGGG
CGGGCTAGCGAGGCGCCGGTGATGCCTANCACACAANCTGACGCGGCTGG
AATACCACGGTCGCGCCCATAATCCTAATACATATCACTCCAGCACCGCA
GAGCTCGCCCTGTCATACCGTCGCTGTATCGCGTAGGTNCTGAATAAGGC
TGCGACGTCTGCTCGCGATACTCATGACGTGCCTGCCGCGCGGCGCGCCG
GCGTCTCCCGCTCCCGAATCTCGCGCACTCGCACGCCACGACGGTGAAGC
ACGGGCGGACGTTGGCTCGCTCCCACGCGCGCTGCTGGTCTGTCGGTGCT
AGTGTAGTGTCCTCGATCCTCCGTGTTGTACGCCTGTTCGCTTTTCTTGC
GTGCCCATCTTCGTGGCGTCGTCCTGTGTCATACGCTGTCGCGCCGCGTA
TGTGTGCGCTTGTGTGCGTCGGCGCTCGCTTGTGATGCTTCGACTCTATG
TCGTCGCGTGTGGTGTTCGCTCTCGTCCCCGTTTGCACTCGGCTATAATG
GATACCTCTACGCTTCGATCGCGGCGCGTGGAGCTCTGTGTTGGGGTGCT
TACTGCTGAATATTAATTGATGATGGCTATATCATGGAGTCTAGAAGAAT
ACTCCATGATATGACGTGTACTCACATAGTAACAACTTAGTACTGAAATC
ACGACTCTGATACAGATTGATGTAGAGTAAAGACCNAAGATGACGGCGTG
CAAAGCCTCATGGCTATGAGACGACTGAATAGCTGCGCTCGCGTTCATGC
TTGGTTATAGCTGAAATCCACGTGTACTAGTNTGTGTGCGTATCATCGAG
TGCGTGATCTGCNTGTATTGTATAACTGCACCACGTATGCTATTCGTCAT
GCTCTACGTCATCATCATACCATGTACGTGTCTTNCTATTCAGGCCGCCT
CATCTATCGCTGAGTCGCCGACACAAGTATCNCAGCTCTATGATACACAT
GTTCTCGTGTATGATCTGTATTCGCACCCTATATACTATATCACTTCATC
GCACNATTANTTGTATGATATGTTCATCTCGCACTCTTCTCATCTAGATA
TGNTCTCTGTCTCTCTTGCTCTATCTACTCACTTCTCATCTATCTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCTCATGTTGGGTGGCAGGAAGATTGA
TAGAAGAGAGATGGGTCTGCACACAGTGTCCCAGAGGCCCCTCTACATCA
CAGAGCATCTGAAGAGCCTGGAGAGGCGGGCAGCTGGCTTGGAACCAGGG
ATCCATGGCACTGCTGTCTAGCAGCGAGCGATGAGGCATGCGCCCTCTCT
GCGCTGTGTGCATCTAGGGTACGGGAGGGTGGTGACATCCAAAGTTCATA
GGGTGCTTTTGTGGGACTGAAAGAGAGAGTTCACTTACATCCCTAGCAGA
GTCCTCAAAACATGGTAACTCCACAATGAACAAGTGATTGTTGCACCGAC
TGTAATCATGCTGCAAGTCTGGGCTCTGCAGTGGTTTTCTGTGTGTGGTG
GGCTGAGCCAGCCCTCTGGACCTCTCAGCACAGATTTTCCCATCCACACT
CCATCCAATTGGATGGCATTGTCATTTTAACAGAAAGAGGTGTTACCCTG
GACAGATAGTATACTGGCCCACGCTCTCACCTCCAGTACAGCAGAGTCCC
CACTTCCAGCATGGCGCAGTTTCCCTCTTACAGAATGATACAGTCCCTCA
CTTCTAGCATAGCACAGTCACCTAGTTCCAGCATGGCGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_d05.g1 MSMg01no045_d05.g1 CHROMAT_FILE:
MSMg01no045_d05.g1 PHD_FILE: MSMg01no045_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:06 2005
         (618 letters)



>mm_chr8_94539707_94540724
          Length = 1018

 Score = 1180 bits (610), Expect = 0.0
 Identities = 616/618 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctcatgttgggtggcaggaagattgatagaagagagatgggtctgcacacagtgtccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 tcctcatgttgggtggcaggaagattgatagaagagagatgggtctgcacacagtgtccc 759

                                                                       
Query: 61  agaggcccctctacatcacagagcatctgaagagcctggagaggcgggcagctggcttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 agaggcccctctacatcacagagcatctgaagagcctggagaggcgggcagctggcttgg 699

                                                                       
Query: 121 aaccagggatccatggcactgctgtctagcagcgagcgatgaggcatgcgccctctctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aaccagggatccatggcactgctgtctagcagcgagcgatgaggcatgcgccctctctgc 639

                                                                       
Query: 181 gctgtgtgcatctagggtacgggagggtggtgacatccaaagttcatagggtgcttttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gctgtgtgcatctagggtacgggagggtggtgacatccaaagttcatagggtgcttttgt 579

                                                                       
Query: 241 gggactgaaagagagagttcacttacatccctagcagagtcctcaaaacatggtaactcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gggactgaaagagagagttcacttacatccctagcagagtcctcaaaacatggtaactcc 519

                                                                       
Query: 301 acaatgaacaagtgattgttgcaccgactgtaatcatgctgcaagtctgggctctgcagt 360
           |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 518 acaatgaacaagtgattgttgcaccgactgtaatcatgttgtaagtctgggctctgcagt 459

                                                                       
Query: 361 ggttttctgtgtgtggtgggctgagccagccctctggacctctcagcacagattttccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ggttttctgtgtgtggtgggctgagccagccctctggacctctcagcacagattttccca 399

                                                                       
Query: 421 tccacactccatccaattggatggcattgtcattttaacagaaagaggtgttaccctgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tccacactccatccaattggatggcattgtcattttaacagaaagaggtgttaccctgga 339

                                                                       
Query: 481 cagatagtatactggcccacgctctcacctccagtacagcagagtccccacttccagcat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cagatagtatactggcccacgctctcacctccagtacagcagagtccccacttccagcat 279

                                                                       
Query: 541 ggcgcagtttccctcttacagaatgatacagtccctcacttctagcatagcacagtcacc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggcgcagtttccctcttacagaatgatacagtccctcacttctagcatagcacagtcacc 219

                             
Query: 601 tagttccagcatggcgca 618
           ||||||||||||||||||
Sbjct: 218 tagttccagcatggcgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)