BAC Information

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BAC

Clone NameMSMg01-045F15
Chromosome8 (Build37)
Map Location 118,781,058 - 118,781,289
singlet/doubletsinglet
Overlap genenone
Upstream geneWwox, Maf
Downstream geneLOC384868, LOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045F15.T7 (MSMg01no045_f15.b1)MSMg01-045F15.TJ (MSMg01no045_f15.g1)
ACCAG276006AG276007
length701770
length of high quality
(start - end)
252 (19 - 270)---
definitionCHROMAT_FILE: MSMg01no045_f15.b1 PHD_FILE: MSMg01no045_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:17 2005CHROMAT_FILE: MSMg01no045_f15.g1 PHD_FILE: MSMg01no045_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACCTATATCCAGAAGATCCGCGGAATTCTTCACTCTTCCTAAATTATAA
GAGTTTACAAAGAAAACAATGGAGTCCTTTAAACTTAGCCACAACTGTTG
CTTATATACAATTTAAGTCTAGCAACAACCAAAGGAAAGCAGCTTGGTCA
ACAGTTAGTTCATAACCGTTAGGGACATCCAACTTCACTGTATACTAACA
TTTTTTTAAAACCCATTCATGTCTTCCTACCTTTTTCTGATGCTTGGGGG
TGGGGTGGGGGGATAGTNATNNTCGACCTCCATCCCCCACACTTTTTCTT
TTTCCTTTTTGTTTCTTTTCCTTTCTTTTCCTCTCTTCTTTACTTCCTTT
ATTCATATTTTTTTATATCTAACTTATTAATTTTTTTTTCCCCCCCCTGT
TTTACATATATATGTTATTCTTTAATCTTTTTTGACAAATAATTTTATTA
ATAAATTATTTATATATTGTATTTACGCGCATCACATTTTTATATTGTTT
TTTTACTTTACTAATCTTTTATTCTATACCACCTCTTTGTTAATACACTA
ATTATTGACATCATCTCCTTCTTCCCTTTTTTACCTTATTCCATGTTTAT
TTATCCTTTTATTTCCCTTTCTATTTTTTCATCTTCTTTATCCTTAATTT
TTTACTCTTTCCTTTCTTCTTCTCCTTTTATTTTTTTATTTTTTTTTGTT
G
GGGGGGGGNNNNGGNNGGGGGGGGGGGGGGTTGNNTTNNNNNNNNCATNT
TNTTTTTCGATGATAGGGAAGGCCTGGCGGACGCCTGGATCCGAACTGAG
GGNGAACTANAGAAGTTACCAAAAAAACATGATGGAATGCGNATGAATTG
GCCAATTTAAATCACTCTATAAGTCACTTATGATCTCTGTACAGAGTAAA
AAGATTCACTGGATCTCCAACCCCAAAGCCCTAAAACAAGTCCTACCTGA
CCTGTGTTATTGTGAAGGAAGATGCAGAGTTTTTTTCTGGGCTAGGACCC
AATGCTTGAGGCTCAGTCATATACGTTTTCTCTAGCGACTATGGATTCAA
CATTTGAACTCCTCTCTGTTCTTTTTTTTTTTTGAGCCTCCTTACGCAAA
AATTTTATTGCGTAATTTCCCCCTTCCTTGAAACTCTTGTAGTGATTAAT
TCCTGACCTTTTCTTGTTTCTCAGCCTTATGGATATGGACGACCTCTAGT
TTATCTATGTATAAGAATTAAGGCTGTCATCCGTATTTTATGTCACGGTA
TTGTATGAACCTTTAATAACTTTGAAGAAGCGCCAATTAATATTGTTTCC
CCTCTATCTTTATCCCCCAAGTTTAAACTTTCACCTTGTATATGAAATCG
ATGTGTATGATTTGTTTGAGGTTCTAGTTTGTTTTTTCCTGCCCCAATTT
TCATAATTTATGCATTTTACTTGTATTTTTTCAAGTATTCGGTTGTTATT
TATACAGCTTGCTTCTTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_f15.b1 MSMg01no045_f15.b1 CHROMAT_FILE:
MSMg01no045_f15.b1 PHD_FILE: MSMg01no045_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:17 2005
         (252 letters)



>mm_chr8_118780854_118781504
          Length = 651

 Score =  412 bits (213), Expect = e-119
 Identities = 228/233 (97%), Gaps = 1/233 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcttcactcttcctaaattataagagtttacaaagaaaacaatggagtcctttaa 64
           ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 205 ggaattcttcactcttcctaaattataagagttcacaaagaaaacaatggaatcctttaa 264

                                                                       
Query: 65  acttagccacaactgttgcttatatacaatttaagtctagcaacaaccaaaggaaagcag 124
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttagccacaactgttgcttatatacaatttaagtctagcaacaaccaaaggaaagcag 324

                                                                       
Query: 125 cttggtcaacagttagttcataaccgttagggacatccaacttcactgtatactaacatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttggtcaacagttagttcataaccgttagggacatccaacttcactgtatactaacatt 384

                                                                
Query: 185 tttttaaaacccattcatgtcttcctacctttttctgatgcttgggggtgggg 237
           ||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 385 tttttaaaacccattcacgtcttcctacctttttctgatgct-gggggtgggg 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 651
Length adjustment: 9
Effective length of query: 243
Effective length of database: 642
Effective search space:   156006
Effective search space used:   156006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)