Query= MSMg01no045_j24.b1 MSMg01no045_j24.b1 CHROMAT_FILE:
MSMg01no045_j24.b1 PHD_FILE: MSMg01no045_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:37 2005
(629 letters)
>mm_chr8_131361297_131362325
Length = 1029
Score = 685 bits (354), Expect = 0.0
Identities = 357/358 (99%)
Strand = Plus / Minus
Query: 272 gaagagagcaacaataaatgcatgcatgctagtacttagcaggctttttatactcttaga 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 gaagagagcaacaataaatgcatgcatgctagtacttagcaggctttttatactcttaga 970
Query: 332 tagccagggtctcctggactcaggaacactttgacccacagtattcaggtcttcctactt 391
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 tagccagggtctccttgactcaggaacactttgacccacagtattcaggtcttcctactt 910
Query: 392 taattaactcagacaagataatcagcaaaaacattcccagaagaacatctcccaggtgat 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 taattaactcagacaagataatcagcaaaaacattcccagaagaacatctcccaggtgat 850
Query: 452 tttagattatgtcaagttgatggccacagccatcatctcatcttacaaggcatcacctat 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 tttagattatgtcaagttgatggccacagccatcatctcatcttacaaggcatcacctat 790
Query: 512 ccatccacaaattcccttctatacctggaacttggggtctaccactaatgggacattagc 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ccatccacaaattcccttctatacctggaacttggggtctaccactaatgggacattagc 730
Query: 572 taatgttactagggttagaactgatccactcagacagtaaccctataaaacagggtac 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 taatgttactagggttagaactgatccactcagacagtaaccctataaaacagggtac 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_j24.g1 MSMg01no045_j24.g1 CHROMAT_FILE:
MSMg01no045_j24.g1 PHD_FILE: MSMg01no045_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:37 2005
(560 letters)
>mm_chr8_131207826_131208785
Length = 960
Score = 1067 bits (552), Expect = 0.0
Identities = 559/562 (99%), Gaps = 2/562 (0%)
Strand = Plus / Plus
Query: 1 tatttctacccttgggttgttactaaatagctgcaatagctattgctggggagaataacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatttctacccttgggttgttactaaatagctgcaatagctattgctggggagaataacc 260
Query: 61 aacagcacagtaaatgctacagtggagaaaggcttacattttgaaaaagcaagaggcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacagcacagtaaatgctacagtggagaaaggcttacattttgaaaaagcaagaggcagc 320
Query: 121 ttatattttctgccaaggtagaacttcaatcctccaggcacagggtaaatggctgtgggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatattttctgccaaggtagaacttcaatcctccaggcacagggtaaatggctgtgggt 380
Query: 181 gtaattggacctcatgcttctgccactacaactttcttgttgagatggactgtaccgtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaattggacctcatgcttctgccactacaactttcttgttgagatggactgtaccgtgt 440
Query: 241 aactgtgagctaaaataaattctttcattaagttgctttgtcagttattgtgccccagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactgtgagctaaaataaattctttcattaagttgctttgtcagttattgtgccccagta 500
Query: 301 gtgagacaagtaattagaacaatgttcatgcattttacatagctaagtaactgcccatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgagacaagtaattagaacaatgttcatgcattttacatagctaagtaactgcccatct 560
Query: 361 cttaacatttttatgaattcaagtatagctacatttctgagcaattatggaacttattaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttaacatttttatgaattcaagtatagctacatttctgagcaattatggaacttattaa 620
Query: 421 tttctattttcttcaaagtttatgacatgtacatgtaaattggtattcctctgacagctt 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 tttctattttcttcaaagtttatgacttgtacatgtaaattggtattcctctgacagctt 680
Query: 481 aggttgagtcctgggagagcagcacaaacactattttgtgtgtgtgtgtgtgtgtgtgtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggttgagtcctgggagagcagcacaaacactattttgtgtgtgtgtgtgtgtgtgtgtg 740
Query: 541 tgtgtgtgt--cgatcttgtgg 560
||||||||| |||||||||||
Sbjct: 741 tgtgtgtgtgtcgatcttgtgg 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
