BAC Information

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BAC

Clone NameMSMg01-048I11
Chromosome8 (Build37)
Map Location 53,813,128 - 53,813,895
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
Downstream geneLOC676688, Aga, Neil3, LOC100040107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048I11.T7 (MSMg01no048_i11.b1)MSMg01-048I11.TJ (MSMg01no048_i11.g1)
ACCAG278272AG278273
length1,2281,280
length of high quality
(start - end)		768 (53 - 820)784 (76 - 859)
definitionCHROMAT_FILE: MSMg01no048_i11.b1 PHD_FILE: MSMg01no048_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:34 2005CHROMAT_FILE: MSMg01no048_i11.g1 PHD_FILE: MSMg01no048_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATCATTTT
ACTATTTAAAGCCCATCTTTACGTTTTATTTTTACATACATCTTGTCATT
GCCCTGCTATTATGTAATTCACTAAGATCTCTCACTCTTGTCTTTACTAT
ATTTTGCTGAGTGCCATTTATTTTGTTATATTATGTGATTTATATTAAGG
CCACCTTAGCTAGCATATACTTCATTCCTCATCAATAAGTGACTGAATTT
CAAGTAAATTTTTTAGTCAGTTCACATTGACTTAAAAAGTAAATATCATA
GAAAATATCAATTTTATGAGATGATATATCATACTATTATTTATCTCTAC
AAACAAGTCTGACGCTCAAAAAGCAGGCAGGCATAAAAAGCTGTAGGCAG
CTTCTAAGCCCCAGGTGAATATCAAATAATTTTGGAGCTTTATACAGAGT
AACTGAATTATCCTTCCTCTTGTAATTGTATGGTTTTGATTTCCATTAGC
TGTTTCTGTCCTTCCACAGTTCACTTGTCATGGTTTCATCATAGTAGTGA
TGTCTTTCAGATTGGAGTCTTTAGAAGGTGATTTTTATAGGGGCAAAGTC
ACAGGATATGCAATTGTGCTGTGATACAAGAAGTCAGAGAGCTTGCTTAC
CCTTTCCACAACACAGGGACACAATTAGAAAGCATCTATTCATGTGTCAG
AATGCTGCTACCACAACATTCTGTGGAAGTTATACATTTTATAAGATTCA
CAATGTTTTAACAAAAAAGCCCCTGAACCATGACTAGTTATGCACAATGA
TAATTCTAACACTTACAGAGTGAAAAAGGAGGAATGGAGTTTTAACACAG
TCAGGACTATGAAGTGATATACTCTGTGTCAATCCTTGGGGGTTTTTTCC
CCCCTAACTCCCAAATTCTTCCTAGATTCTCCCCTTACTGTGGAATTCTA
TTATGTCCAGATAGAATTTTCTTGTAAATTTTTGGGGTTTATTTTTTTTT
TTTATTCCCCCTCTCAAAAAATATGTTCTTTTTTTTTCTTCGTTTTTGCA
TTATTTTCTTTATATTCATACTCTGTTCTTTCTTATATCTATTTTTTTTC
TTTTTACTTTTCCGTTTCTACCATTTATTCCTTCCATTTATTTATACATT
TCCTTCTGTCCCTTTTCTTTATTATTTCTGTCTTTTTTATATTATTTTTT
TCTTTTTTATCTTTGCTTATTCTTCTTT

NCTGTTTTTTTTTTAACATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTGTTCAGCTTTGAGCCCCAT
ATTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTT
ATATATATTGGATGTTAGTCCCCTATCTGATTTAGGATGGATAAAGATCC
TTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGATGGTGTCTTTTGCA
TTGCAGAAGCTCTGCAACTTTATGTGGTGCCATTTATCGATTTGCAAATC
AAAACAACCCTGAAATTCGACCTCACACCAGTCAGAATGGTTAAGATCAA
AAATTAAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAAGTTTGTATAACCACTCTGGAAATCA
GTCTGGTGGATCCTCAGAAAATTGGACATAGTACTACAGGAGGATACCGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCCTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGAAATGGATACAGAAAATGTG
GTACATTTACACAATGGAGTACTACTCAGCTATTANAAAGAATGAATTTA
TGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG
ATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGCTA
AACGCATCGAACTCAAGAAGAACGAAGACCAACTTGTGGACACTTTGCCC
CTTCTTAGAATTGGGAACCAAACACCCTTGGAAGGAGTTACAGAAACAAA
GTTTGAAGCTGTGACGAAAGGATGGACCTTCTACAAATTGCCATATCCGG
GCATTTATCCCATAATAGTTTTTCCAAACTGGAACTATGGGGTAACCTAT
CACGATTTTTTTAAATGGACCCGACTATTCTTTTTTTTTTTAAAAATGTC
TAGGGCCCTCTATAACTAAATTGGTGTTTCCTTTCCTCTTTGTTCAAAAT
TAAATTCCTCCCCTCTGTGATATATAATATCTCCTGTGTTTTAGGGTTTC
TGCCCCTTCTTGTTAGAACTATTATATTTTTCTATCTCCGATCTTTTTTT
TTTTTTTTTATTGTTTAAATTGTTTTACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_i11.b1 MSMg01no048_i11.b1 CHROMAT_FILE:
MSMg01no048_i11.b1 PHD_FILE: MSMg01no048_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:34 2005
         (768 letters)



>mm_chr8_53812928_53814095
          Length = 1168

 Score = 1392 bits (720), Expect = 0.0
 Identities = 756/768 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatttaaagcccatctttacgttttatttttacatacatcttgtcattgccctgctatta 60
           |||||||||  || ||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 tatttaaaggtcacctttacgttttatttttacatacatcttgtcattgcaatgctatta 260

                                                                       
Query: 61  tgtaattcactaagatctctcactcttgtctttactatattttgctgagtgccatttatt 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtaattcagtaagatctctcactcttgtctttactatattttgctgagtgccatttatt 320

                                                                       
Query: 121 ttgttatattatgtgatttatattaaggccaccttagctagcatatacttcattcctcat 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ttgttatattatgtgatttatattaaggccaccttagctagcaaatacttcattcctcat 380

                                                                       
Query: 181 caataagtgactgaatttcaagtaaattttttagtcagttcacattgacttaaaaagtaa 240
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 381 caataagtgactgaatttcaagtaaaatttgtagtcagttcacattgacttaaaaagtaa 440

                                                                       
Query: 241 atatcatagaaaatatcaattttatgagatgatatatcatactattatttatctctacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatcatagaaaatatcaattttatgagatgatatatcatactattatttatctctacaa 500

                                                                       
Query: 301 acaagtctgacgctcaaaaagcaggcaggcataaaaagctgtaggcagcttctaagcccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaagtctgacgctcaaaaagcaggcaggcataaaaagctgtaggcagcttctaagcccc 560

                                                                       
Query: 361 aggtgaatatcaaataattttggagctttatacagagtaactgaattatccttcctcttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtgaatatcaaataattttggagctttatacagagtaactgaattatccttcctcttg 620

                                                                       
Query: 421 taattgtatggttttgatttccattagctgtttctgtccttccacagttcacttgtcatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taattgtatggttttgatttccattagctgtttctgtccttccacagttcacttgtcatg 680

                                                                       
Query: 481 gtttcatcatagtagtgatgtctttcagattggagtctttagaaggtgatttttataggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtttcatcatagtagtgatgtctttcagattggagtctttagaaggtgatttttataggg 740

                                                                       
Query: 541 gcaaagtcacaggatatgcaattgtgctgtgatacaagaagtcagagagcttgcttaccc 600
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 741 gcaaagtcacagggtatgcaattgtgctgtgatacaagaagtcagagagcttgcttatcc 800

                                                                       
Query: 601 tttccacaacacagggacacaattagaaagcatctattcatgtgtcagaatgctgctacc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 801 tttccacaacacagggacacaattagaaagcatctattcatgtgtcagagtgctgctacc 860

                                                                       
Query: 661 acaacattctgtggaagttatacattttataagattcacaatgttttaacaaaaaagccc 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 acaacattctgtggaagttatacattttataagattcacaatgttttaacaaaaaagccc 920

                                                           
Query: 721 ctgaaccatgactagttatgcacaatgataattctaacacttacagag 768
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 ctgaaccatgactagttatgcacaatgataattctaacacttacagag 968


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 768
Length of database: 1168
Length adjustment: 10
Effective length of query: 758
Effective length of database: 1158
Effective search space:   877764
Effective search space used:   877764
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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