Query= MSMg01no048_k12.b1 MSMg01no048_k12.b1 CHROMAT_FILE:
MSMg01no048_k12.b1 PHD_FILE: MSMg01no048_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:50 2005
(500 letters)
>mm_chr8_95039563_95040462
Length = 900
Score = 861 bits (445), Expect = 0.0
Identities = 482/495 (97%), Gaps = 4/495 (0%)
Strand = Plus / Plus
Query: 8 gaattcaacaaatatttattgaccctttaaaatatgccaggaacacacagagatccccac 67
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 208 gaattcaacaaatatttattgagcctttgccatatgccaggaacacacagagatccccac 267
Query: 68 agat-c-ctttttaatgatgaaccaaaatccaatgtatcattaacaaaccaccattggtg 125
|||| | |||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 268 agatacacttt--aatgatgaactaaaatccaatgtatcattaacaaaccaccattggtg 325
Query: 126 tgtatgtgtggacacatgtacatcacacatgagcaagcatgtgtgcatacacatacacat 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgtatgtgtggacacatgtacatcacacatgagcaagcatgtgtgcatacacatacacat 385
Query: 186 acccgtgtctgtgaggatagctgaatcccttgaggaggtcagagggtctcctgtcagtct 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acccgtgtctgtgaggatagctgaatcccttgaggaggtcagagggtctcctgtcagtct 445
Query: 246 aatttacattttctattattgaaccgtgccatttccatacactttgagaatattcataag 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aatttacattttctattattgaaccgtgccatttccatacactttgagaatattcataag 505
Query: 306 tcccaatgttgaatctgaatgagcaaggaacaatggtcggggatttcagattgtccagac 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tcccaatgttgaatctgaatgagcaaggaacaatggtcggggatttcagattgtccagac 565
Query: 366 ttacatgacctcaacagccacaagagatatctgtgctcaaggctgtcccagtccttcctg 425
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgacatgacctcaacagtcacaagagatatctgtgctcaaggctgtcccagtccttcctg 625
Query: 426 gttttcagacttatcccacacaacactcaaactcattcctagcattcagctgtgaggatc 485
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gttttcagacttatcccagaaaacactcaaactcattcctagcattcagctgtgaggatc 685
Query: 486 caggagtctcccgct 500
|||||||||||||||
Sbjct: 686 caggagtctcccgct 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_k12.g1 MSMg01no048_k12.g1 CHROMAT_FILE:
MSMg01no048_k12.g1 PHD_FILE: MSMg01no048_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:50 2005
(356 letters)
>mm_chr8_95183118_95183873
Length = 756
Score = 650 bits (336), Expect = 0.0
Identities = 351/356 (98%)
Strand = Plus / Minus
Query: 1 tgggcagagcatagaatttaaaaaggacttaagaaatagtaccccctactatgactttaa 60
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 556 tgggcagagcatagaatttaaaaaggactcaagaaatagtaccaggtactatgactttaa 497
Query: 61 aggcaatattctagatcattctgtttccagtgcttgatcctgtatttgtgagatggactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aggcaatattctagatcattctgtttccagtgcttgatcctgtatttgtgagatggactg 437
Query: 121 aaggaaaatagaccctgagaaaccatttctggtaggatttgaggtcgttgtatattttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaggaaaatagaccctgagaaaccatttctggtaggatttgaggtcgttgtatattttga 377
Query: 181 atttactttaggcttatgcagaaacttggatttaaccaaaataaaatgtccagtatctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atttactttaggcttatgcagaaacttggatttaaccaaaataaaatgtccagtatctgt 317
Query: 241 catacgattgcgttccatgggtatttcagttcttggccaattattatcactgccttggtg 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 catacgattgtgttccatgggtatttcagttcttggccaattattatcactgccttggtg 257
Query: 301 agaccccttgtgactaattttatttctgattcctgtacttacttctcttcccacga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agaccccttgtgactaattttatttctgattcctgtacttacttctcttcccacga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space: 259209
Effective search space used: 259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
