BAC Information

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BAC

Clone NameMSMg01-048P20
Chromosome8 (Build37)
Map Location 101,429,176 - 101,429,744
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik, LOC667531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048P20.T7 (MSMg01no048_p20.b1)MSMg01-048P20.TJ (MSMg01no048_p20.g1)
ACCAG278605AG278606
length1,2161,232
length of high quality
(start - end)		569 (79 - 647)727 (86 - 812)
definitionCHROMAT_FILE: MSMg01no048_p20.b1 PHD_FILE: MSMg01no048_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:31 2005CHROMAT_FILE: MSMg01no048_p20.g1 PHD_FILE: MSMg01no048_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAAAACATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCTAGTCAGCTTCTGTAACATTTAAGCCTTGATTTTCAACCTGTCATAAG
ACAAAACCATCTTACTAACCTATTTCCCGTGTGCAGAGAACCATTAAAGT
AAGAATATTCGGTCTAAGTATGTTGAAAGTTTTAAATGGGAGATTTCAAG
ATTATACAACATTGTCCTGTGTTGTGGATTTTTGAAAACCATCTATACGT
GCTAGCTGCATTCCTTGACTTCAGTTCCAATTGAAAACTTCAGAGACATC
TGCAAGTTTTTATAGGAGCAAAATGCATTCTTAAGAGTTAAGATCCACTG
CTATTGAGATGTTTTTCACATTTTATATATTATATATTTTAATTCAACCA
AAAATTATATCTGTATATACATACATATATATATTACATTTATGTTACAG
ATAACATTAGCCATTCTTATATAATAAATGTAACCCTATCAAATTTTTAG
TTCTAGTTTTCATTATTGGTAATAATGATTTCAAAGTAAAGCATGGGTAG
TGGACATCATGATCTTATGTGGCGGCATAACCATCATGAACAAGAGAAAT
GGCTTAGTCTATAGCCACTCACAGTGAAAGCATAGATAGAAATGTTCXXX
XXXXXXXXXXXXXXXXXCTCAGAATTTCTATTAGTTTCTTTTTATTGTTA
TCATAAAATGACACTATCAAAGAAACCGATGAAAGAAAGAGCTTATTTGT
GTTTATGGATCCAGAGGCAGACTGTATAAGAGCAGAGGAGGCTAGAAATA
GGTGATCCTAGCAGGAAGCTTCAACTTTTCATTCTCAAGTGCAGAGAAGA
AACAGGAAGAACTTGAGTGGACGGCTCTATGAACTTCATGCCTGGCAAAA
GTTACCCATTCCCTTCAGCAACACAATATATGCTTAAAGGTCCACAACTT
CCTACAATAGTATCTCCCGGTGGTGACCCATAGTTTAAATACCTAAGCTT
AAGGGGGAAAACTTTCTTATCTTTATTCCTGAATCCCTTTACCTTTGGTT
AAACGGGGGGTAAAAAACTGGATATTTTTTTAATACCATTTTTTGTTTAA
ATACCCTTGTGTCAACAATGTTCAAAACATCCCTCTTGTTTTTTCTTCTT
TTCTTCTTTCTTTATTTTCTCTTTTCTTCNCCTTTTNTCTCTATCTTTTC
TCTTTTCTTCTTTCAT

NAAATTTTTTTNTAAAGATGGGAGGCTGGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTCATGAACAACAGGCTCCCA
GATAACAATTAAATATGACCTTTCTATTAAAATTGACAGTCTATTGAAAT
CTACAGACTGGGGAAAAAAACCTTCACTAACTCCACATAAAATACAGGGA
TAACATCCAAAATATATAAAGAACACAAGAAGCTAACTTCCAAAAAACCA
AATAACCCAATCAAAAAATGGGGTATAGACATAAACAGAGAATTCACAAC
AGAGGAATCTTAAATGGCCAAGAAACACTTTAAAATGCTCAAAGTCACCC
AAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGAAGAACGAAG
ACCAAATTGTGGACACTTTGCCCCTTCTTAGAATTTGGAACAAAACACCC
ATCGAAGGAGTTACAGAGACACAGTTTGGAGCTGAGACAAAAGGATGGAC
CACCTAGAGACTGCCATATCCGGGGATCCATTCCATAATCAGCTTCCAAA
TGCTTACACCATTGCATACACTAGAGAGATTTTGCTGAAAGGACCCAGAT
ATAGCTGTCTCTTGCGAGACTATGCCGGGACCTAGCAAACACAGAAGGTG
ATGCTCACAGTCAGCTATTGGATGGATCACAGAGCCCCCAATGGAGGAAC
TAGAGAAAGTAACCAAAGAGCTAAAGGGATCTGCAACCCTATAGGTGGAA
CAACAATATGAACTAACCAGTACCCCACCAGAGCTCGTGTCTCTAGCTGC
ATATGTATCAGAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCA
TTGGTCGTGCAAACTTTATCTGTCTCAGTACAGGGGAACGCCAGGGCCAA
GAATTGTGATTGCGTGTNTGGNGGACCGTGTGGNGGGCCTTTGGGAATAG
CTTTGGAATGTTAATGAAATAAATACCTTATTTAACCAAAAGAGAAAAAA
AAACCTTACTAACTAACTTAAATAATTAATTAAATAAATTAATACCCCCA
AACCCCTTATTAAATTAAGAAAATTGCGAAACCTAAATGGGCCCTGAAAA
ATTCCCCTTTACGCAAATCAAAAAGGGCTAAAAAAAAAAAACTTCTTGGG
TAAACCCCCTTGTTGGTAAAAGCTGTTGTTAAAAAAAAAAAAAAAATTTT
TTCTTTTGTGTGGGGGGAATTGGAATAATGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_p20.b1 MSMg01no048_p20.b1 CHROMAT_FILE:
MSMg01no048_p20.b1 PHD_FILE: MSMg01no048_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:31 2005
         (569 letters)



>mm_chr8_101428976_101429944
          Length = 969

 Score = 1048 bits (542), Expect = 0.0
 Identities = 563/570 (98%), Gaps = 2/570 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgattttcaacctgtcataagacaaaaccat-cttactaacctatttcccgtgtgcaga 59
           |||||||||||||||||||||||||||||||| |  |||||||||||||  |||||||||
Sbjct: 201 ttgattttcaacctgtcataagacaaaaccatac-aactaacctatttcaggtgtgcaga 259

                                                                       
Query: 60  gaaccattaaagtaagaatattcggtctaagtatgttgaaagttttaaatgggagatttc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gaaccattaaagtaagaatattcggtctaagtatgttgaaagttttaaatgggagatttc 319

                                                                       
Query: 120 aagattatacaacattgtcctgtgttgtggatttttgaaaaccatctatacgtgctagct 179
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 320 aagattatacaacattgtcctgtgttgtggatttttgaaaaccatttatacgtgctagct 379

                                                                       
Query: 180 gcattccttgacttcagttccaattgaaaacttcagagacatctgcaagtttttatagga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcattccttgacttcagttccaattgaaaacttcagagacatctgcaagtttttatagga 439

                                                                       
Query: 240 gcaaaatgcattcttaagagttaagatccactgctattgagatgtttttcacattttata 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcaaaatgcattcttaagagttaagatccactgctattgagatgtttttcacattttata 499

                                                                       
Query: 300 tattatatattttaattcaaccaaaaattatatctgtatatacatacatatatatattac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tattatatattttaattcaaccaaaaattatatctgtatatacatacatatatatattac 559

                                                                       
Query: 360 atttatgttacagataacattagccattcttatataataaatgtaaccctatcaaatttt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atttatgttacagataacattagccattcttatataataaatgtaaccctatcaaatttt 619

                                                                       
Query: 420 tagttctagttttcattattggtaataatgatttcaaagtaaagcatgggtagtggacat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tagttctagttttcattattggtaataatgatttcaaagtaaagcatgggtagtggacat 679

                                                                       
Query: 480 catgatcttatgtggcggcataaccatcatgaacaagagaaatggcttagtctatagcca 539
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 catgatcttatgtggtggcataaccatcatgaacaagagaaatggcttagtctatagcca 739

                                         
Query: 540 ctcacagtgaaagcatagatagaaatgttc 569
           ||||||||||||||||||||||||||||||
Sbjct: 740 ctcacagtgaaagcatagatagaaatgttc 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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