Query= MSMg01no049_a02.b1 MSMg01no049_a02.b1 CHROMAT_FILE:
MSMg01no049_a02.b1 PHD_FILE: MSMg01no049_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:33 2005
(740 letters)
>mm_chr8_125426109_125427250
Length = 1142
Score = 1311 bits (678), Expect = 0.0
Identities = 724/742 (97%), Gaps = 10/742 (1%)
Strand = Plus / Minus
Query: 5 gaattcattgtagctgaagacatcccctgaacggagccatgactgaagtagaaaataaaa 64
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 942 gaattcattgtagctgaagacatctcctggacggagccatgactgaagtagaaaataaaa 883
Query: 65 gagagacagagacagatacatatatat--atataaatggatcttgtcagagcctcaggga 122
|||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 882 gagagacagagacatatatatatatataaatataaatggatcttgtcagagcctcaggga 823
Query: 123 gcatttgctgtagtgtgagcagaaagacattattgaagagcactggcagagtcctaggcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gcatttgctgtagtgtgagcagaaagacattattgaagagcactggcagagtcctaggcc 763
Query: 183 cctggcaccccagcagccaggagctgggtttgttgccctttccatcaaggactctgtccc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cctggcaccccagcagccaggagctgggtttgttgccctttccatcaaggactctgtccc 703
Query: 243 tgggaaagcatgctctgtcc-tgctgcctttcctccatggatgccgtcagaacaggctgc 301
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tgggaaagcatgctctgtccttgctgcctttcctccatggatgccgtcagaacaggctgc 643
Query: 302 cagtgcaagccacaccagcagtccaggtgaagggcagtgctgagtgataaaacacaactg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cagtgcaagccacaccagcagtccaggtgaagggcagtgctgagtgataaaacacaactg 583
Query: 362 tcttacctcagaggcctggcatgagacgtgtgggtgaggaggaagatcctgcagagaagc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tcttacctcagaggcctggcatgagacgtgtgggtgaggaggaagatcctgcagagaagc 523
Query: 422 agagtgcagcacgttccctgtctctgggtgtccatccctcctgttctcagcccttgggcg 481
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 522 agagtgcagcacattccctgtctctgggtgtccatccctcctgttctcagaccttgggcg 463
Query: 482 gtacccaaagcaaagactaaacagcacagttttaa-ggggg-ctgttg-atccagttgga 538
||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||
Sbjct: 462 gtacccaaagcaaagactaaacagcacagttttaaagggggactgttggatccagttgga 403
Query: 539 cagctctccctgctgtggactccacctgccacttattcaactgtctgtcaccttggagct 598
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 402 cagctctccctgctgtggactccacctgccacttattcaactgtc----accttggagct 347
Query: 599 ctcagtggtctacttcgcggtgtagcagacaatatgtaactgtgacagtgggtgtggagc 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctcagtggtctacttcgcggtgtagcagacaatatgtaactgtgacagtgggtgtggagc 287
Query: 659 tgggtcaccctctcttcaggggtgcaggcccatgtcaggcagctcagacggttttggaca 718
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 286 tgggtcaccctcttttcaggggtgcaggcccatgtcaggcagctcagacagttttggaca 227
Query: 719 cagaactttcagtgtcctttgg 740
||||||||||||||||||||||
Sbjct: 226 cagaactttcagtgtcctttgg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 740
Length of database: 1142
Length adjustment: 10
Effective length of query: 730
Effective length of database: 1132
Effective search space: 826360
Effective search space used: 826360
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no049_a02.g1 MSMg01no049_a02.g1 CHROMAT_FILE:
MSMg01no049_a02.g1 PHD_FILE: MSMg01no049_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:33 2005
(713 letters)
>mm_chr8_125412594_125413710
Length = 1117
Score = 1203 bits (622), Expect = 0.0
Identities = 688/712 (96%), Gaps = 6/712 (0%)
Strand = Plus / Plus
Query: 5 ggtaggggaggttctgggatcaagctagctgtaccgactatgttccaaggtgaaccaaat 64
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 ggtaggggaggttctgggatcaagctagctgtaccga-tatgttccaaggtgaaccaaat 263
Query: 65 gagccccaccctcctttgcccatgtgtgtattttctgcctaggcagaggtcagcatgacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagccccaccctcctttgcccatgtgtgtattttctgcctaggcagaggtcagcatgacc 323
Query: 125 gttcccttggacaaacccttacactgtagc-atgatggcgagtctctccaagtcaggaag 183
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 324 gttcccttggacaaacccttacactgtagcaatgatggcgagtctctccaagtcagggag 383
Query: 184 gaacaaacaagggagctggctacaaaatccagctgtgtagaaaggaagctgcttgcagtg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaacaaacaagggagctggctacaaaatccagctgtgtagaaaggaagctgcttgcagtg 443
Query: 244 aggtgaaaagggattccagaaataggacagcactatgtggctgtgtgaaagaaaaggcca 303
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggtgaaaagggattcctgaaataggacagcactatgtggctgtgtgaaagaaaaggcca 503
Query: 304 gttctgaggcccgaggagaaggtcagaagaagtcgtttgtacggtcaagcgggatgtgct 363
||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 504 gttctgaggtccgaggagaaggtcagaagaagttgtttgtatggtcaagcgggatgtgct 563
Query: 364 atgtatgggacgaccctgctgaagggactaaggacagccctgccaggcagaacaacagcc 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 564 atgtatgggacgaccctgctgaagggactaaggacagccctgccaggcagaacagcagcc 623
Query: 424 actgatgtcttaaaatg----ccaatgaaggagtggaggctccagaatggcagtgaggcc 479
||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct: 624 actgatgtcttaaaatgaactccaatgaaggaatggaggctccagaatggcagtgagacc 683
Query: 480 caagaaccatgccaggtgacggtgggaacggggagggagacaaggcagccgagggccttt 539
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 684 caagaaccatgccaggtgaaggtgggaacggggagggagacaaggcagctgagggccttt 743
Query: 540 cattgtgaaagaggagaaaaagagccagcaggaaaagtgcagagaccactggggtgggag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cattgtgaaagaggagaaaaagagccagcaggaaaagtgcagagaccactggggtgggag 803
Query: 600 gaggctgtgcataacgaacggctagctagaggaactgaccctccaacaggacaagaatgc 659
|||| ||| ||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 804 gagggtgtacataacgaagggctagctagaggaactgaccctcaaacaggacaagaatgt 863
Query: 660 cactgcctcctgaacacactgctctctgctcgccattgccctgctgccgggt 711
||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 864 cactgcctcctgaccacactgctctctgctcgttattgccctgctgccgggt 915
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1117
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1107
Effective search space: 778221
Effective search space used: 778221
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
