BAC Information

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BAC

Clone NameMSMg01-049P06
Chromosome8 (Build37)
Map Location 90,958,329 - 90,958,795
singlet/doubletsinglet
Overlap geneLOC100040369
Upstream geneCbln1, LOC100040294, 4933402J07Rik, Zfp423, LOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7
Downstream geneNkd1, 9130017C17Rik, Nod2, Cyld, LOC675985, Sall1, LOC100041089, EG625801, EG384862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049P06.T7 (MSMg01no049_p06.b1)MSMg01-049P06.TJ (MSMg01no049_p06.g1)
ACCAG279201AG279202
length1,2241,227
length of high quality
(start - end)
480 (37 - 516)469 (68 - 536)
definitionCHROMAT_FILE: MSMg01no049_p06.b1 PHD_FILE: MSMg01no049_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:30 2005CHROMAT_FILE: MSMg01no049_p06.g1 PHD_FILE: MSMg01no049_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATTTTTNNNNNTCATTGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGG
AATTCCTTGGTAGGCCAAGTTGCCCTTGATTTCCCAATCCTTCTGCCTTG
GCCTCCTCATCTTGGATTATAGTCTCTGCCTCAAGGCTTGACTTTTGAGA
TTTATACACAGCGGTGTGGATACAGGGCTCTCCATTCTTCAACACTTCTA
GAGAAGCTGAGAAGCACAGGCTATGCCCATCTGGACTTGCCTTGCTTCCC
ATAGAAGGGAAGTTATCCTAGGACAGGGACTCTGTCACCCACTCTGGGTG
ACACCAGAGTAAAGCACATTCTGAGAAGGGTACTTGTGTATGGGACAAAA
TGGGGACAGCTCAGTGGGGTCACCAGCTGGGCTAGCTTGGTGGCTTCCCC
AAACTTCAGGTCAGCACAAAGAATCTGGTTCAAGAAAGAAAGCAAAGAGG
AAGAGGAAACCGAAAAGAAGGAAGGGGAGGGAGAAAAGGGAGAGGAAGAG
GAAGGAGAAGGAGGGCGTCNNNNNNNTNNNTNNNTNNNTNNNTNNNCCTT
TCTCTNTTTTTCCCTTTTTTCTCCTTTTTCTCTCTCTTCCTCTTTTCCTT
TTCTTCTCTTTTCCCCTCTTCTTCTTTCCTTTCTTTTTTTTTTCTCTTTC
TTTTTTTCTTTTCTCTCTNTTTTTTTTCTTTCTTCCCTTCCTTTTTTCTC
TCCCTTCTCTTTTCTTCCTTCTTTTCTTTTCTTTTCTCTTCCTCTTTTTT
TCTTTTCTTTCTTCTCTTTCTCTCCTCCCCCTTTTTCTTTTTTCTTTCTT
TTTTCCTTCTTTCTTCTTCCTCCTTTTTTTTTTCTCTTCTTTTTTTTTTT
TTGTTCTTTTGTTTTTTTGTTTTTTTTTTTTTTTTTTTCTTCTTTCTTTT
TTTTTTTCCCCTTTTTTTTCTTTTTCTTTTTTTTCTCTTTTCTCTTTTCC
TTCCCCTCTCTCTTTCCTTCTTTCTGTGTTTCTTTCTCTCTTCTCCCTTT
CCTCTCTTTTTTCCTTTCTTTCTCTTTCCTCTCTTCTTTTGTTGTTTTTT
TTGTCTTTCTCTCNCTTTCTCTTCTTCTTTTTCTCTCTCTTTTCTTCTTC
GTTTCCTTTTCGCTGTTTCTTCCTTCTTCTTCTTTCTTTCTCTTCCTTCT
TTCTCTCTTTTTTCTCTCTCCCCTGTCTTTCTCTTCCTCCTTCTTCTTTT
GCTCGTNTCTTCTTTCTCCTTTCT
NNNNNGCTGAAGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCTTTGTTTAGCTCTGTACCCCATTTTTTACA
GGGTTATTTGAATTTCTGGAGTTCAGCTCCTTGAGCTCTTTGTATATATT
GGATATTAGTCCTCTATCAGATTTAGGATTGGTAAAAATTCTTTCCCAAT
CTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCCCTACAGAAG
CTTTGCAATCTATAGGATGGAACACAGGGCCCCCAATGTAGGAGCTAGAG
AAAGTACCCAAGAGCTGAAGGGGTCTGCAACCCTATAGGTAGAACAACAA
TATGAACTAATCAGTACCCCCAGAGCTCGTGTCTCTAGCTGCATATGTAG
CAGAAGATGGCCTAGTCGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTA
GCAAACTTTATATGCCCCAGTACAGGGAAACACCAGGGCCAAGAAGTGGG
AGTGAGTGGGTAGGGGAGCAGGGTGGGGAGAGGNTTTNNTNNNTCCTNCT
CTTTTCCTTTTTTTTTTTTTTTNTTTTTTNTTTTTTTTCCTTTCTTTTTT
CTTCTTTTTTNTTTCTCCCCTTTCTTCTCTCTTCCNTTCCTTCCCTTTTC
TTTCTTTTTCTCCCCTTTCTTTTTCCTCTTCTCTCTCTTTCCTCTTTTTC
TCTTCTTCTTTTTCTTTTTTCTCCTTCCTCTTTTTNTTTTTTCCTTTTTT
TTTCGTTCTTTTTTCCCCCTTCTTCCTTCCTCTTTTTTTTTTCTCTTTTT
TCTTCCTTTTTTTTCTTTTCTTCTCTTCTCTTTTCTTTCTTTCTCCTTCT
TCTTTCTCCTTCCTTTTCTTCTTTTTTTTCCTTCTCTTTTTCCTTCTTTC
TTTCCCTCCTTTTTCTCTCTCTCCTCCTCCTCTTTCTTCCCTCTTCTCTT
TCCCCTTTCTTTTTTCCTTTTTCTTTCTTCTCTCCCTTTCTTCCCTCTTT
CTTTCTCCTCTCTCCTCTTTCTTCCTCCTCTCTCCCCCCTTCTTTCCTCT
CTCTTCTCTCTTCTCCTCTTTCCTTCCCTCCCCTCCCTCCCTTCTTTTTT
TTTTTTTCCCCCTTTCTCTNTCTTCTCTTTCTCTCCTTTCTCCTTTCTCT
CTTTCTCTCTTTTCTCCCTTCCTTTCTCTCTTCCTTTTCTTTCTCTTTTT
TTTTCTTCTCTTTCCTTTTCTCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_p06.b1 MSMg01no049_p06.b1 CHROMAT_FILE:
MSMg01no049_p06.b1 PHD_FILE: MSMg01no049_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:30 2005
         (480 letters)



>mm_chr8_90958199_90959079
          Length = 881

 Score =  895 bits (463), Expect = 0.0
 Identities = 466/467 (99%), Gaps = 1/467 (0%)
 Strand = Plus / Minus

                                                                       
Query: 14  gaattc-cttggtaggccaagttgcccttgatttcccaatccttctgccttggcctcctc 72
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gaattcacttggtaggccaagttgcccttgatttcccaatccttctgccttggcctcctc 538

                                                                       
Query: 73  atcttggattatagtctctgcctcaaggcttgacttttgagatttatacacagcggtgtg 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atcttggattatagtctctgcctcaaggcttgacttttgagatttatacacagcggtgtg 478

                                                                       
Query: 133 gatacagggctctccattcttcaacacttctagagaagctgagaagcacaggctatgccc 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gatacagggctctccattcttcaacacttctagagaagctgagaagcacaggctatgccc 418

                                                                       
Query: 193 atctggacttgccttgcttcccatagaagggaagttatcctaggacagggactctgtcac 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 atctggacttgccttgcttcccatagaagggaagttatcctaggacagggactctgtcac 358

                                                                       
Query: 253 ccactctgggtgacaccagagtaaagcacattctgagaagggtacttgtgtatgggacaa 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ccactctgggtgacaccagagtaaagcacattctgagaagggtacttgtgtatgggacaa 298

                                                                       
Query: 313 aatggggacagctcagtggggtcaccagctgggctagcttggtggcttccccaaacttca 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aatggggacagctcagtggggtcaccagctgggctagcttggtggcttccccaaacttca 238

                                                                       
Query: 373 ggtcagcacaaagaatctggttcaagaaagaaagcaaagaggaagaggaaaccgaaaaga 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ggtcagcacaaagaatctggttcaagaaagaaagcaaagaggaagaggaaaccgaaaaga 178

                                                          
Query: 433 aggaaggggagggagaaaagggagaggaagaggaaggagaaggaggg 479
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 aggaaggggagggagaaaagggagaggaagaggaaggagaaggaggg 131


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 881
Length adjustment: 10
Effective length of query: 470
Effective length of database: 871
Effective search space:   409370
Effective search space used:   409370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)