Query= MSMg01no050_j14.b1 MSMg01no050_j14.b1 CHROMAT_FILE:
MSMg01no050_j14.b1 PHD_FILE: MSMg01no050_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:08 2005
(274 letters)
>mm_chr8_115150937_115151610
Length = 674
Score = 416 bits (215), Expect = e-121
Identities = 260/281 (92%), Gaps = 11/281 (3%)
Strand = Plus / Plus
Query: 1 gtggacctgtgcttacaaatagcaagaatacgtgtgtaaggtagaaacagatttaaggct 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 201 gtggacctgtgcttacaaataccaagaatacgtgtgtaaggtagaaacagatttaaggtt 260
Query: 61 gggacaagggagtgaaaagtgcaataaaataataagtgtggacttagtatcattttgtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggacaagggagtgaaaagtgcaataaaataataagtgtggacttagtatcattttgtag 320
Query: 121 ttagtaaaactggatgtcctagtataggggaatgctaaggtgctgaggcagaagtgggtg 180
|||||||| ||||||| || |||||| ||||||||||||||| |||||||||||||||||
Sbjct: 321 ttagtaaagctggatgccccagtataagggaatgctaaggtggtgaggcagaagtgggtg 380
Query: 181 ggtgggggagcaccctcatagaagcagggggacggg-------atgggggtttgcatagg 233
|| |||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct: 381 gg----ggagcaccctcatagaagcagggggaggggggaggggatgggggtttgcagagg 436
Query: 234 ggagtccaggaaagggaataacatttgaacggtaaataaat 274
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 437 ggagtccaggaaagggaataacatttgaaaggtaaataaat 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no050_j14.g1 MSMg01no050_j14.g1 CHROMAT_FILE:
MSMg01no050_j14.g1 PHD_FILE: MSMg01no050_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:08 2005
(262 letters)
>mm_chr8_115294278_115294939
Length = 662
Score = 445 bits (230), Expect = e-129
Identities = 254/262 (96%)
Strand = Plus / Plus
Query: 1 aacattcaaggcagaggattccaagtgcccttcacatctttcctggcatcctttggggat 60
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 201 aacattcaaggcagaggattccaagtgggcatcacatctttcctggcatcctttggggat 260
Query: 61 tattggcaaaggtatgtttggggaagggatgaggtagggtctctaaggcgctccactggc 120
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tattggcaaaggtgtgtttggggaagggatgaggtagggtctctaaggcactccactggc 320
Query: 121 ctgattgttaggctgccattagcagtgggataaacacatgcttgaaatgtctagctgaaa 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgattgttaggctgccattggcagtgggataaacacatgcttgaaatgtctagctgaaa 380
Query: 181 gcttagcgtccctccccagcatcctgtcactgttggtcatcactgaaaactttgattatc 240
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttagtgtccctccccagcatcctgtcactgttggtcatcactgaaaactttgattata 440
Query: 241 ggacaggggacacttatcactg 262
||||||||||||||||||||||
Sbjct: 441 ggacaggggacacttatcactg 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space: 165209
Effective search space used: 165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
