Query= MSMg01no052_k17.b1 MSMg01no052_k17.b1 CHROMAT_FILE:
MSMg01no052_k17.b1 PHD_FILE: MSMg01no052_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:21 2005
(680 letters)
>mm_chr8_89809868_89810947
Length = 1080
Score = 1216 bits (629), Expect = 0.0
Identities = 664/676 (98%), Gaps = 2/676 (0%)
Strand = Plus / Plus
Query: 6 gaattcttgatgag-acccaagtctccttggcataatctcaccgtctatcccagtgccct 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttgatgagaagccaagtctccttggcataatctcaccgtctatcccagtgccct 265
Query: 65 tgccaaagcagagccatacagaagcacaggcaggtgctcagctgggggagtctctctccg 124
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 266 tgccaaagcagagccatacagaagcacaggcaggtgctcagc-gggggagcctctctccg 324
Query: 125 agggctacaagactgtggtgtatgcacttagagtcctcggaccaatctggctctgagtca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agggctacaagactgtggtgtatgcacttagagtcctcggaccaatctggctctgagtca 384
Query: 185 atataaatgtatttaatatcggcatttttctcttcttcgaaaaatcgtgttatttactga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 385 atataaatgtatttaatatcggcatttttctcttcttcgaaaaatcgtgttatgtactga 444
Query: 245 ctgtattgattgcaggcatgtttatactggcaggaatgtaatttatctcattggagtcat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtattgattgcaggcatgtttatactggcaggaatgtaatttatctcattggagtcat 504
Query: 305 ctgtgtggaagtagcaaggtcctagtggaagccaagacatttgttggcttgccagcagct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgtgtggaagtagcaaggtcctagtggaagccaagacatttgttggcttgccagcagct 564
Query: 365 catctttatttaccaacaatgtgtctcttcagaagccctatttctgggatgaatatagac 424
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catctttatttaccaacaatgagtctcttcagaagccctatttctgggatgaatatagac 624
Query: 425 acactgtggcttgtagacataattccaaacttcttagaaggcaaggcgctcaagggaagc 484
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 625 acactgtggcttgtagacatagttccaaacttcttagaaggcaaggagctcaagggaagc 684
Query: 485 gtagtacagaaagcatgctttagtgatgctgtggatggactctcctcatcagggggtctg 544
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 685 gtagaacagaaagcatgctttagtgatgctgtggatggactctcctcgtcagggggtctg 744
Query: 545 tctgtgcagaactccaccactggaggcgtgctctgaaaagaggagggcacagctagctct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tctgtgcagaactccaccactggaggcgtgctctgaaaagaggagggcacagctagctct 804
Query: 605 ccctaatcccatgagacgaagaacctgtattcgtgattttgcatatagtanaaggcatgt 664
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 805 ccctaatcccatgagacgaagaacctgtattcgtgattttgcatatagtaaaaggcatgc 864
Query: 665 ataacccaacattgta 680
||||||||||||||||
Sbjct: 865 ataacccaacattgta 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_k17.g1 MSMg01no052_k17.g1 CHROMAT_FILE:
MSMg01no052_k17.g1 PHD_FILE: MSMg01no052_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:21 2005
(628 letters)
>mm_chr8_89898442_89899469
Length = 1028
Score = 1131 bits (585), Expect = 0.0
Identities = 618/629 (98%), Gaps = 2/629 (0%)
Strand = Plus / Minus
Query: 1 tttggtagcatccataccttacaggatgctgatcacagggcacctgaagaaagctagagt 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 828 tttggtagcatccataccttacaggatgctgatcatagggcacctgaagaaagctagagt 769
Query: 61 ctctgatgaacatttgaaatatggcaaatttatggcattaattcttgtttcacaagcaca 120
||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||
Sbjct: 768 ctctgatgaacatttgaaatatggcaattttatggcattaattcctgtttcacaggcaca 709
Query: 121 ccaatggcctggaaggacctttggtcctttgctcaggccatactgctggtaagaaaccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ccaatggcctggaaggacctttggtcctttgctcaggccatactgctggtaagaaaccaa 649
Query: 181 ggccaggtctgagtgcttccgatcctgctgccaatgtctcaaaatcagccacaaccctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ggccaggtctgagtgcttccgatcctgctgccaatgtctcaaaatcagccacaaccctca 589
Query: 241 aacatggctattcttaaaatcttgacacgtgtgtatcgcacctctgcaactgaagacata 300
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 588 aacacggctattcttaaaatcttgacacgtgtgtgtcgcacctctgcaactgaagacata 529
Query: 301 taggctgtgtatatcttttatcaactaaaatgtgaaaatgaattgttagcagatgttctt 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 528 taggctgtgtatatcttttatcaactaaaatgtgaaaatgaattgttagcggatgttctt 469
Query: 361 tggtttaa-aaaaatatactgagggaaataaccaaggcttccctacaaggggatctcaca 419
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tggtttaacaaaaa-atactgagggaaataaccaaggcttccctacaaggggatctcaca 410
Query: 420 tggtgagaggccaccggacgcactggctgctccctgccgctcctgctatccctgaggggt 479
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 409 tggtcagaggccaccggacgcactggctgctccctgccgctcctgctatccctgagaggt 350
Query: 480 aacagttcagctccatctatgaaggctggagagggttgtttctaaacagtggctgacctt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aacagttcagctccatctatgaaggctggagagggttgtttctaaacagtggctgacctt 290
Query: 540 aatctgtctccaaggaccactgctttatttctagactatgttcagtggctctttaaattg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aatctgtctccaaggaccactgctttatttctagactatgttcagtggctctttaaattg 230
Query: 600 ccaaactgcttttctccacaatgtactga 628
|||||||||||||||||||||||||||||
Sbjct: 229 ccaaactgcttttctccacaatgtactga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
