BAC Information

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BAC

Clone NameMSMg01-052L18
Chromosome8 (Build37)
Map Location 124,596,422 - 124,596,710
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxf1a, Mthfsd, Foxc2, Foxl1, 1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp
Downstream geneGm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052L18.T7 (MSMg01no052_l18.b1)MSMg01-052L18.TJ (MSMg01no052_l18.g1)
ACCAG281146AG281147
length770704
length of high quality
(start - end)
44 (121 - 164)289 (70 - 358)
definitionCHROMAT_FILE: MSMg01no052_l18.b1 PHD_FILE: MSMg01no052_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:26 2005CHROMAT_FILE: MSMg01no052_l18.g1 PHD_FILE: MSMg01no052_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGTACCCGCGGNATTCCATA
CAGAATTTCTNTCATCGGTCAGCCATGAGACTCAGTGAAATCATACAATG
TGCTTACGAGGTACCTCCCACAGAGACAGCAGGTATGTGTTCTCAGCTCA
ATGGGGTGAGGGTGGGGATTGGTGGGGAAGGCGGCGAGCCTCCTTTCTTC
CTTCCCCCCCCCTCCCTTTTTCCCCCTCTTCCTCTCTTTCCTTCCTCCTT
TCTTCCTTTCCTTTTCCCCTCTCCCCCCCCTTCCTTTTTTCCTCCCTTTC
CCTCCCTTCCCCCTCCTCCCTTTTTTTTTTTTCTCCTTCCCTTCCTTCTC
TCCCCTACCCCTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCTCCTT
TTTCTCCTTTCCCTTCCTCTTTTTTCTCCTCTTTTCCCCACATTATCTTC
CCTTTTCTCTTTTTTTTCTCCCTTCCCCCTTTTTTTTCCCTCCCTTCTCC
CTCCTCTTTTTCATCCCTCCTTTCCCTTTCTCCCTTTCTTTCTCCTTTTC
CCCTCTCTCTTCCCTCTTTTACCCCTCCTCTCTTCTTCTTTTTTTTTCCA
CTCCCCTTTTCCTTCCTCTCTATCTCTCTCCTCTCTTTTTCCCCTTCCCC
CCTTTTCCCCCTTTTTTTTTTTTTTTCCTTTTTCCGCACCTCTTCCCCTC
TCTCTTCTTTTCCTTTTCCTTTCCTTTTTCTCTCTTTTTCTATCCTCTTT
TCCTTCTCCTCCCCCCCTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTGCAAGGGACAATACCAAGATAAACGCTCTTG
GGATTGAACTGGCAGAACTTGGGGGTGAAAAATGTGATGGCTAAGGAAAA
ACAAAAACCCTCAGTTGCTGAGTTAAAGCCAAGCTCCGACAGCGGGTGGG
AGAAGCAGCCGACTGCGGGCAGAGATAGGATGTGGAAAGCTAGATGGATC
CCATTAGAACTTAGAGGATGGGATAGGACGGAGCAGGGACTGCTGTTGGC
CATTTTAACAGGATGGTATGTTGTGAGAAAGGCCATATTCAGGGAAGGGG
CTAGGGATGTATCTCAACTGCCACAGCTACAACTTGTCTGGCACTCGTGA
GACTCTGGGTATCATCCTCACCACCACCTACCAGACTGGGTGGACGATCT
GTGCTTGTAGACCCAGCACTTGTCAGGCAAAGGCAGGAGGATCAGAAGTT
CAAGGTCACCCTCAGCTAGCTAGGGGGTTCAAGGCTATCCTGAGCTTTTG
CAATATACATCAAGACGGTGTTGATTCACTAGTGTGAGGCACGGATCCCC
TACGTGAATTGAACTCTGATTTGTTTTAACTTATGAGATAGGGGATGCCT
CCCGGTTTATAACGTGTCATACCTTTGCTTGATCCCAGGAATCCACTTTG
GTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_l18.g1 MSMg01no052_l18.g1 CHROMAT_FILE:
MSMg01no052_l18.g1 PHD_FILE: MSMg01no052_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:26 2005
         (289 letters)



>mm_chr8_124596222_124596910
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaagggacaataccaagataaacgctcttgggattgaactggcagaacttgggggtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaagggacaataccaagataaacgctcttgggattgaactggcagaacttgggggtgaa 260

                                                                       
Query: 61  aaatgtgatggctaaggaaaaacaaaaaccctcagttgctgagttaaagccaagctccga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgtgatggctaaggaaaaacaaaaaccctcagttgctgagttaaagccaagctccga 320

                                                                       
Query: 121 cagcgggtgggagaagcagccgactgcgggcagagataggatgtggaaagctagatggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcgggtgggagaagcagccgactgcgggcagagataggatgtggaaagctagatggat 380

                                                                       
Query: 181 cccattagaacttagaggatgggataggacggagcagggactgctgttggccattttaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccattagaacttagaggatgggataggacggagcagggactgctgttggccattttaac 440

                                                            
Query: 241 aggatggtatgttgtgagaaaggccatattcagggaaggggctagggat 289
           ||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggatggcaggctgtgagaaaggccatattcagggaaggggctagggat 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)