Query= MSMg01no052_m12.b1 MSMg01no052_m12.b1 CHROMAT_FILE:
MSMg01no052_m12.b1 PHD_FILE: MSMg01no052_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:30 2005
(615 letters)
>mm_chr8_23555300_23556314
Length = 1015
Score = 1094 bits (566), Expect = 0.0
Identities = 587/594 (98%), Gaps = 1/594 (0%)
Strand = Plus / Minus
Query: 22 gcttgccctcctctctctccctgagtatgcattgtgcatgtgtgtgagcatctgagtgag 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 gcttgccctcctctctctccctgagtatgcattgtgcatgtgtgtgagcatctgagtgag 955
Query: 82 catgtgtgtgtgtgcgtgtggaggccagaggtcaaagttggatggtttcctctatcattt 141
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 catgtgtgcgtgtgcgtgtggaggccagaggtcaaagttggatggtttcctctatcattt 895
Query: 142 ccccaacctcctgtttttgaggcaaggtccctaactgatcctggagctcgctgactcagc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 ccccaacctcctgtttttgaggcaaggtccctaactgatcctggagctcgctgactcagc 835
Query: 202 ttgacgggctggggattgagcccctgggaactctctgcctctgacttccttttacacagg 261
||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 834 ttgacgggctggggattgagcccctgggaactctctg-cttttacttccttttacacagg 776
Query: 262 tgctggggatctgcgctgaggtgttcatgtttgcatagttagtcttttgcccgttgaacc 321
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 775 tgctggggatctgcgctgaggtgttcatgtttgcatagttagtcttttgtccgttgaacc 716
Query: 322 atctgcccgaccctgaacaagtttcagaacgatgtaacttgtagttcatttctgcatttc 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 atctgcccgaccctgaacaagtttcagaacgatgtaacttgtagttcatttctgcatttc 656
Query: 382 tggttatttcacttgagattgatttaattcccaaatctgggcatttgaatcttttaccaa 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tggttatttcacttgagattgatttaattcccaaatctgggcatttgaatcttttaccaa 596
Query: 442 ctcctgaaaatgtcatgccactgaatatttaataattatttttcttctcattctttgtgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ctcctgaaaatgtcatgccactgaatatttaataattatttttcttctcattctttgtgc 536
Query: 502 tttgtatttcctcattttttcctttattgtgtctgctttcttttctatatctttcacctc 561
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 535 tttgtatttcctcattttttcctttattgtgtctgttttcttttctatatctttcacctc 476
Query: 562 tttgtctctttgtgttaaattctgggtaagatctttggggatatttctattcat 615
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 475 tttgtctctttgtgttaaattctgggtaagatctttgggtatatttctattcat 422
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_m12.g1 MSMg01no052_m12.g1 CHROMAT_FILE:
MSMg01no052_m12.g1 PHD_FILE: MSMg01no052_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:30 2005
(592 letters)
>mm_chr8_23435298_23436289
Length = 992
Score = 1083 bits (560), Expect = 0.0
Identities = 584/592 (98%)
Strand = Plus / Plus
Query: 1 atctcatattgttttgtgcccaatagagcgggccatcttcagggagcttacagcagctcc 60
||||||||||| | ||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 201 atctcatattgatgtgtgcccaatagagcgggccatcttcagggaactcacagcagctcc 260
Query: 61 tctcgcatagcatcagccatctatccaagcctggtgatttgcccaagatcctcatttgct 120
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 261 tctcgcatagcatcagccatctatccaagccgggtgatttgcccaagatcctaatttgct 320
Query: 121 aatggaaaagcagacatgggaatatttctcccctaagcactcttacccatctccatggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatggaaaagcagacatgggaatatttctcccctaagcactcttacccatctccatggca 380
Query: 181 tgatgctttatttgactagtctccagctcaacgtttccttaaaattggagctggaaattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatgctttatttgactagtctccagctcaacgtttccttaaaattggagctggaaattt 440
Query: 241 acatgcataagataagttgctaaatacccaacacatagtgttttatttacatatattcta 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatgcagaagataagttgctaaatacccaacacatagtgttttatttacatatattcta 500
Query: 301 gataggaacaaaaaatgtaaacattttacttaggagcacagaacatttggtatgcaactg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gataggaacaaaaaatgtaaacattttacttaggagcacagaacatttggtatgcaactg 560
Query: 361 atgagaacttttatttaaaatttatacttataaagagctttctttcgttttgctaagttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgagaacttttatttaaaatttatacttataaagagctttctttcgttttgctaagttt 620
Query: 421 ataccatgttgggggatgtgtgattgatttagttttactaacttttctaggaatgtggtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataccatgttgggggatgtgtgattgatttagttttactaacttttctaggaatgtggtt 680
Query: 481 aagaaatttgtgcgcatccttgtgtcctcggttgccttcaggtatgtgaatgaatagaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagaaatttgtgcgcatccttgtgtcctcggttgccttcaggtatgtgaatgaatagaaa 740
Query: 541 tggaagtaattaaatatctacgatatttaattttaaaagtttaatgagaaag 592
|||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 741 tggaagtaattaaatatctatgatatttaattttaaaagtttaatgagaaag 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
