BAC Information

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BAC

Clone NameMSMg01-054B05
Chromosome8 (Build37)
Map Location 97,041,060 - 97,041,476
singlet/doubletsinglet
Overlap genenone
Upstream geneCes7, Gnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339
Downstream geneAI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054B05.T7 (MSMg01no054_b05.b1)MSMg01-054B05.TJ (MSMg01no054_b05.g1)
ACCAG282111AG282112
length758699
length of high quality
(start - end)
457 (122 - 578)565 (81 - 645)
definitionCHROMAT_FILE: MSMg01no054_b05.b1 PHD_FILE: MSMg01no054_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:11 2005CHROMAT_FILE: MSMg01no054_b05.g1 PHD_FILE: MSMg01no054_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTTTTTTTTTTTNNNNTNNTTTCTTTCTCTTTTCTTCCTTTCTCAG
TACACCCTCGNACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGATTGCCAATTACTAGGAGAATAAAAGT
AGAGAGTTAAGTTACTAAGAAACTGTGGCTGGCAAGACGGCTCGGTAGAG
AAAGGTGCTCCGTGCCAAGCCTAAGGATCTGAATTTGGTCCTTGAATCCC
ATTTAGTGGAAAGCAAGCTATTCCCAAAAGCTGTCCTCTGACCTCTGCAT
GTTCACCATGGCATATGCGCGCACGCACGCACGCACGCGCGCACGCACGC
ACGCACGCACGTAATGTTAAAAGAAGGAAGAAAACTGTGCAGATGCCAGA
GACACAGGAGGGAGTTCTACCCAGAGTTTATATCCTCTCTTCTGTAACAG
CATCTAAAAAGGCCTCCTAAGTCCAGGGAACAGGTGATCTCACCTAGCCA
ATGAGGCAACTGAGAATTTAGGGGCAGGGCAGATGACCATATGACCGAGC
TCATTTTTTAAGTCTCCCGCTGATCACAGGGATACACGTGCTCCCTTTCC
ACTAAATCAGAGGAGAGAAAGCTGCTGAGGGTGCTGGGTGCTTACACTGA
GACCAGTAACTGGCCCTTGGAGTCAGCCAGGTCTGAAGTTAAGTTGCCTA
GCACTTTCCCATTACCTACGAAAAGGAATAATGGCAAAAGGCCACCCTAA
ATCTTGCC
NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGATATATTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATCCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATAAAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_b05.b1 MSMg01no054_b05.b1 CHROMAT_FILE:
MSMg01no054_b05.b1 PHD_FILE: MSMg01no054_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:11 2005
         (457 letters)



>mm_chr8_97040620_97041476
          Length = 857

 Score =  719 bits (372), Expect = 0.0
 Identities = 412/438 (94%), Gaps = 22/438 (5%)
 Strand = Plus / Minus

                                                                       
Query: 21  aataaaagtagagagttaagttactaagaaactgtggctggcaagacggctcggtagaga 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aataaaagtagagagttaagttactaagaaactgtggctggcaagacggctcggtagaga 798

                                                                       
Query: 81  aaggtgctccgtgccaagcctaaggatctgaatttggtccttgaatcccatttagtggaa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aaggtgctccgtgccaagcctaaggatctgaatttggtccttgaatcccatttagtggaa 738

                                                                       
Query: 141 agcaagctattcccaaaagctgtcctctgacctctgcatgttcaccatggcatatgcgcg 200
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 737 agcaagctattcccaaaagctgtcctctgacctctgcatgttcaccatggcatat----- 683

                                                                       
Query: 201 cacgcacgcacgcacgcgcgcacgcacgcacgcacgcacgtaatgttaaaagaaggaaga 260
                          |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ---------------gcgcgcacgcacgcacgcacgcacgtaatgttaaaagaaggaaga 638

                                                                       
Query: 261 aaactgtgcagatgccagagacacaggagggagttctacccagagtttatatcctctctt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aaactgtgcagatgccagagacacaggagggagttctacccagagtttatatcctctctt 578

                                                                       
Query: 321 ctgtaacagcatctaaaaaggcct-cctaagtccagggaacaggtgatctcacctagcca 379
           ||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct: 577 ctgtaacagcatctaaaaatg-ctacctaagtccagggaacaggtgatctcacctagcca 519

                                                                       
Query: 380 atgaggcaactgagaatttaggggcagggcagatgaccatatgaccgagctcatttttta 439
           ||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 518 atgagtcaactgagaatttaggggcagggcacatgactatatgaccgagctcatttttta 459

                             
Query: 440 agtctcccgctgatcaca 457
           ||||||||||||||||||
Sbjct: 458 agtctcccgctgatcaca 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)