BAC Information

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BAC

Clone NameMSMg01-054C01
Chromosome8 (Build37)
Map Location 58,203,704 - 58,203,866
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356
Downstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054C01.T7 (MSMg01no054_c01.b1)MSMg01-054C01.TJ (MSMg01no054_c01.g1)
ACCAG282149AG282150
length768705
length of high quality
(start - end)
172 (214 - 385)575 (74 - 648)
definitionCHROMAT_FILE: MSMg01no054_c01.b1 PHD_FILE: MSMg01no054_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:14 2005CHROMAT_FILE: MSMg01no054_c01.g1 PHD_FILE: MSMg01no054_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCCCCCNNNNCCCNNNCCCCCNCCTCTCCTNCGTAGGCACCAAAGG
NGNNNGNNGCCATTATTCTAATGTCCACTAAANGANTCACTATTTCGCAA
GGATGGGNGGAANNNTTACATTACCGAAGGAAATGGNNATAANTACTGGN
GAAAATTGGAGNTGAATTAGGGTTATTTCCCCAATGTTTTGGNTAAGTGG
GNATGGTTAGGGNCATTATAGTATCTGGAATATATTAGTGTCAGGAAAAA
AGACAAGGGAGACTGAGAAATGAAGAGCAAGGTGCCGGGTGATGAAAGTG
TTTAAACCTTTTAGGCAGTTTCATTTGAAGATTCATCAAGGGGAATGCTG
AAAGGAAAAACTGAATGAGAATGTGTTTTTTTTTTAAGACAACCCTGNGC
GAAGNATAAAAATGGGAATTTTCTGTCCCCCACAGCTGGTATATGTAGGA
AAATTAGCATCTTAAAGATCTTGTCTTATATTTTTGTGAAGACCCACTTT
CCTACCAGCTTCTTGATGTAGGCAAGGCATCTCTTTTGATGAATGGACAC
AATTTTATGTTACAGAGCAGGACCTAGAAGTAAGGGCAGCCCTCTCTGAG
GCTCTATGTTCTTTTTATTATGTGACACAAGGAATTTGCTTTCTAACTCT
TATCATTCTATGGGGAAAGAGATGGCTTCCCTTGCTTCTAGGTTAATATT
CACTGAAATTCTTAATGGGAGTATTAAAAGGAGGAAAATTCATTGGGCGG
CTTTGGATTATATTAAAG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGACAGAG
AAGCAACTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATTTATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAAAATGTACTCACTGATAAGTG
GATATTAGCCCCCAACCTAGGATTCCCAAGATATAAGGTACAATTTGCTA
AACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_c01.b1 MSMg01no054_c01.b1 CHROMAT_FILE:
MSMg01no054_c01.b1 PHD_FILE: MSMg01no054_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:14 2005
         (172 letters)



>mm_chr8_58203504_58204075
          Length = 572

 Score =  308 bits (159), Expect = 2e-88
 Identities = 162/163 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattatagtatctggaatatattagtgtcaggaaaaaagacaagggagactgagaaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cattatagtatctggaatatattagtgtcaggaaaaaagacaagggagactgagaaatga 304

                                                                       
Query: 61  agagcaaggtgccgggtgatgaaagtgtttaaaccttttaggcagtttcatttgaagatt 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 303 agagcaaggtgccgggtgatgaaagtgtttaaacctttcaggcagtttcatttgaagatt 244

                                                      
Query: 121 catcaaggggaatgctgaaaggaaaaactgaatgagaatgtgt 163
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 catcaaggggaatgctgaaaggaaaaactgaatgagaatgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)