Query= MSMg01no055_a08.b1 MSMg01no055_a08.b1 CHROMAT_FILE:
MSMg01no055_a08.b1 PHD_FILE: MSMg01no055_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:20 2005
(289 letters)
>mm_chr8_124723323_124724012
Length = 690
Score = 489 bits (253), Expect = e-143
Identities = 286/309 (92%), Gaps = 20/309 (6%)
Strand = Plus / Plus
Query: 1 tgccaagctgctccttaggggaacatcccggttctctgaaggatgagctcatgccctgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tgccaagctgctccttaggggaacatcccggttctctgaaggatgagctcatgaactgag 260
Query: 61 aaacatggtgatttttttt-ccaggttctgaaagagtaagacacgttgatgggaaaacgc 119
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacatggtgatttttttttccaggttctgaaagagtaagacacgttgatgggaaaacgc 320
Query: 120 aaatgtgtccgcatgtgagcaggcagtgcaggccagctctgtccagattcggggtgttct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatgtgtccgcatgtgagcaggcagtgcaggccagctctgtccagattcggggtgttct 380
Query: 180 catcgggtctggcttatgtatttgtggagtgagccctgctcccaccctggctaccagggg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcgggtctggcttatgtatttgtggagtgagccctgctcccaccctggctaccagggg 440
Query: 240 cctgaaccccaccccag-------------------tttccacagcaattgctggtctgc 280
||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 cctgaaccccaccccagcttccaaagcagcctctggtttccacagcaattgctggtctgt 500
Query: 281 gatgtcagc 289
|||||||||
Sbjct: 501 gatgtcagc 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space: 190680
Effective search space used: 190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no055_a08.g1 MSMg01no055_a08.g1 CHROMAT_FILE:
MSMg01no055_a08.g1 PHD_FILE: MSMg01no055_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:20 2005
(134 letters)
>mm_chr8_124882949_124883482
Length = 534
Score = 248 bits (128), Expect = 1e-70
Identities = 131/132 (99%)
Strand = Plus / Minus
Query: 1 agtagctagttagggctgcccagaatctaaatagagcccagacctgccacatcccaacaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 332 agtagctagttagggctgcccagaatctaaatagagcccagacctgccacatccaaacaa 273
Query: 61 tgaatcatctgcttcccgaaaccctggatgtgcgtagggatgtctcatctgtaccatgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgaatcatctgcttcccgaaaccctggatgtgcgtagggatgtctcatctgtaccatgtg 213
Query: 121 attatccccggg 132
||||||||||||
Sbjct: 212 attatccccggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space: 66276
Effective search space used: 66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
