Query= MSMg01no055_e09.b1 MSMg01no055_e09.b1 CHROMAT_FILE:
MSMg01no055_e09.b1 PHD_FILE: MSMg01no055_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:39 2005
(272 letters)
>mm_chr8_63850683_63851354
Length = 672
Score = 298 bits (154), Expect = 3e-85
Identities = 224/274 (81%), Gaps = 42/274 (15%)
Strand = Plus / Minus
Query: 5 gaattcaaagctatcaatttccctgcttcatcctgagcaaaccccaatgtttgcatcata 64
||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 351 gaattcaaagccatgaatttccctgcttcatcctgagcaaaccccactgtttgcatcata 292
Query: 65 ctgatcctgccctgaccttctcaatctgcctctaacatagtacataagtgcctgtgagca 124
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 291 ctgatcctgctttgaccttctcaatctgcctctaacatagtacataagtgcctgtgaaca 232
Query: 125 cagtgatatctgtctgtctgtctgtct--------cccccacacaggacacacactacac 176
||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 231 cagtgatgtctgtctgtctgtctgtctgtctgtctcccccacacaggacacacactacat 172
Query: 177 acacacacacacacacacacacacacacacacacacacacacacttatacacactcacac 236
|||||||||| ||||||||||||||||
Sbjct: 171 acacacacac----------------------------------ttatacacactcacac 146
Query: 237 atacattcacacacattaacataccctcacacca 270
||||||||||||||||||||||||||||||||||
Sbjct: 145 atacattcacacacattaacataccctcacacca 112
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space: 174369
Effective search space used: 174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no055_e09.g1 MSMg01no055_e09.g1 CHROMAT_FILE:
MSMg01no055_e09.g1 PHD_FILE: MSMg01no055_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:39 2005
(373 letters)
>mm_chr8_63729535_63730307
Length = 773
Score = 675 bits (349), Expect = 0.0
Identities = 367/373 (98%)
Strand = Plus / Plus
Query: 1 caaagcggcttttacaaatcggttgtaattaattgcatgtgcagatgctgatgctgagat 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagcggcttttagaaatcggttgtaattaattgcatgtgcagatgctgatgctgagat 260
Query: 61 ggggagggaattagtctaattatgtttaaagtacagtttgcatgcctaaataggtaatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggagggaattagtctaattatgtttaaagtacagtttgcatgcctaaataggtaatca 320
Query: 121 caccgcaggcctgcctatccttgtccactttctcctttaggcatgtagtaaattttttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caccgcaggcctgcctatccttgtccactttctcctttaggcatgtagtaaattttttgg 380
Query: 181 ccattaagcatgacctcttcagagtctgtggagcaggtcaaagtgacggcactcagatgc 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 ccattaagcatgacctcttcagagtctgtggagcagggcaaagtgacggcactcagatgc 440
Query: 241 cagggttgcacgcactcctggggaagttcgatactcagtggcagcatccgtagaagattc 300
||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 441 cagggctgcacgcactcctggggaagtttgatacttagtggcagcatccgtagaagattc 500
Query: 301 tcgatggaacctttagtagatgctaggggaattttgtaccctctagcttatttctatttt 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 tcgatggaacctttagtagatgctaggggaattttgtaccctctagcttacttctatttt 560
Query: 361 atttccttatgtg 373
|||||||||||||
Sbjct: 561 atttccttatgtg 573
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
