BAC Information

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BAC

Clone NameMSMg01-056K08
Chromosome8 (Build37)
Map Location 33,869,332 - 33,869,575
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041340, Nrg1, 2010007E15Rik, EG666589, EG546052
Downstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056K08.T7 (MSMg01no056_k08.b1)MSMg01-056K08.TJ (MSMg01no056_k08.g1)
ACCAG284005AG284006
length699715
length of high quality
(start - end)
99 (116 - 214)244 (79 - 322)
definitionCHROMAT_FILE: MSMg01no056_k08.b1 PHD_FILE: MSMg01no056_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:22 2005CHROMAT_FILE: MSMg01no056_k08.g1 PHD_FILE: MSMg01no056_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCACTTTCCGAAGAGGATCCGCGGAATTCTTACTTT
CGCATCTCTGTTTTAAGGAGCGAGGATAACATCAAAGAAGGCAAGTATGC
CCTGAAACCCAATAGAAATGAATGAATATATATTTCACGGACATTCTAGT
TGAATATTTGTCCTTGCCCAAGTTCACAATGAAATTTAATCGTTCTCATG
TTGGTACTGGAAGGTGGGACTTAAGATATTGAGGTTATTATGGTTATGCA
TTCACACGCAAGTACTGTAATCTTATAAAGCTGTTTGCCCTCTCGTAGGA
ATATTTTGTATTTCTCTTTCTGCTTCCCCACCCTGCGCCCCTTGTCTTCT
TACCACCCCCACGCCTCCTGCCATATGATGACTCAATAAAAGGTTTACAC
CAGAATCCATCAATTTAACATTATATTTCTCAACCAACTCCCAACCCCCA
GCTTTTGCAGCTGCATATTCTTATTCATTCTTCTGGCCATCTGGGCTTCT
CCCTCCCATACCTCATCCTGTCCCCTTTCTCTCCCACCCCTCTCATGTCC
CTCTCTTCTTCTGCCCCACCCCACGATTATTTTATTCCCCCTTTTAAATG
GGATTGATACTTTTTCCCTTGGGTTTATACCTCTTTTAAACCTCTTATGG
CCATTGACTTTGTATCAAGCCCGAACATCCTAAATAAACGCATGTCGAG
CCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACGCGGAGATCCAAATATGAAATTTGCTTATGTT
CCATGTGTGTACTTTTTCCACACCGTCTGAAGGCAATTTTATATGACATT
TAAAATGATTTTGTACATAAAACAAACTTTATGATATGGATCTTTTTCTC
TTGCAGCATCAATACTCAAATATTAGTTCAGAGCATTTTGGATTTCAGTA
TTTTACATTACTGATGTTCAAGTTGTATTATGTTCTATATATGGAAAGAA
CCATATAATTGTTATTCTTTTACTATTACCACAAACTTAAGTGCCCAGAG
CACTTGCACTTGAATGCAATTATACTAGCCTAATTTGGTAAAACTAATTA
TCATGGTTATAACACAGCTATAAATGCTCTATTTTTATTTTTATGAGCTC
ACACAAATGCACATATACTTTCATACTATATGAACATTTTATTAGCCCAC
ATACATATTATTACATATGTGCATGTCTTTGTATGCGCGAACTTTTATAA
TATAATTACTAAATAGCACGAATATTTTCTTATATATGACTTATGATAAT
TGCGAAATTTCACACAATGTGCCTTGAAAATGTCACTCTAAATTCCAGCA
CATACTTTTTGTATCAACGACAACTCTACCTTCACCTGGCCTCACAGTTT
CCCAGAACCGCATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_k08.g1 MSMg01no056_k08.g1 CHROMAT_FILE:
MSMg01no056_k08.g1 PHD_FILE: MSMg01no056_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:22 2005
         (244 letters)



>mm_chr8_33869132_33869775
          Length = 644

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatatgaaatttgcttatgttccatgtgtgtactttttccacaccgtctgaaggcaatt 60
           |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 444 aaatatgaaatttgcttatgtttcatgtgtgtactttttccacacagtctgaaggcaatt 385

                                                                       
Query: 61  ttatatgacatttaaaatgattttgtacataaaacaaactttatgatatggatctttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 384 ttatatgacatttaaaatgattttgtacataaaacaaactttatgatatggatctctttc 325

                                                                       
Query: 121 tcttgcagcatcaatactcaaatattagttcagagcattttggatttcagtattttacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 324 tcttgcagcatcaatactcaaatattagttcagagcattttggatttcagtattttagat 265

                                                                       
Query: 181 tactgatgttcaagttgtattatgttctatatatggaaagaaccatataattgttattct 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagtgatgttcaagttgtattatgttctatatatggaaagaaccatataattgttattct 205

               
Query: 241 ttta 244
           ||||
Sbjct: 204 ttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)