Query= MSMg01no056_l11.b1 MSMg01no056_l11.b1 CHROMAT_FILE:
MSMg01no056_l11.b1 PHD_FILE: MSMg01no056_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:27 2005
(569 letters)
>mm_chr8_115560694_115561662
Length = 969
Score = 1038 bits (537), Expect = 0.0
Identities = 561/569 (98%)
Strand = Plus / Minus
Query: 1 ctagctctctaagttcctatcatttttaaagatgtcttgattaagacatagcagggaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 769 ctagctctctaagttcctatcatttttaaagatgtcttgattaagacataggatggaatt 710
Query: 61 aagcatattcaagttagattaatgaaatactgattcgaatcaagcatatcttacaatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aagcatattcaagttagattaatgaaatactgattcgaatcaagcatatcttacaatatt 650
Query: 121 gagaatttcttcatattgacttcctttccttaaaattcatgttccttattccttgtgttt 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 649 gagaatttcttcatattgacttccttcccttaaaattcatgttccttattccttgtgttt 590
Query: 181 aatgtgattattttacagaaaatactcagatagcatgttatagaactacacatgtggctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aatgtgattattttacagaaaatactcagatagcatgttatagaactacacatgtggctg 530
Query: 241 ccttctatccgtatcaatattttgaaattatgttttcattttccatcaactcatttttcg 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ccttctatccgtagcaatattttgaaattatgttttcattttccatcaactcatttttcg 470
Query: 301 gacagaaaaatgtgtatattgccatcattataacactgcaggttttgaaacactattgag 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gagagaaaaatgtgtatattgccatcattataacactgcaggttttgaaacactattgag 410
Query: 361 agtgaagtgctggccttgacaaaaataaatgtttctaacaaatgacatactttgaatttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 agtgaagtgctggccttgacaaaaataaatgtttctaacaaatgacatactttgaatttt 350
Query: 421 cctttcaactgaatttgcatttttattttacattttttattctcacatgatgttatgaaa 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cctttcaactgaatttgtatttttattttacattttttattctcacatgatgttatgaaa 290
Query: 481 tagatacaccgagtagttatactgaattcagcctgccaataaactaaatgaaatttttag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 289 tagatacaccgagtagttatactgaattcagcctgccaataaactaaatgaaaattttag 230
Query: 541 gcgcttcaactagaaacatcatccaagtt 569
|||||||| ||||||||||||||||||||
Sbjct: 229 gcgcttcatctagaaacatcatccaagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_l11.g1 MSMg01no056_l11.g1 CHROMAT_FILE:
MSMg01no056_l11.g1 PHD_FILE: MSMg01no056_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:27 2005
(297 letters)
>mm_chr8_115453189_115453888
Length = 700
Score = 472 bits (244), Expect = e-137
Identities = 278/300 (92%), Gaps = 19/300 (6%)
Strand = Plus / Plus
Query: 1 acttttaactgtaaggattcatagaaatggttttcatcacta---ttttttctttgtctt 57
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 201 acttttaactgtaaggattcatagaaatggttttcatcactatttttttttttttgtctt 260
Query: 58 tggaaaaacaaaagtataaagaatagcctagctcatgtggtcaagttattttctggacat 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaaaaacaaaagtataaagaatagcctagctcatgtggtcaagttattttctggacat 320
Query: 118 gcaaacacagcatttcttcttcttctactccttcttcttcttcttcttttttcttttttt 177
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 gcaaacacagcatttcttcttcttctact------tcttcttcttcttttttctttttta 374
Query: 178 cttttttcttcttttttttttttttacaattgactaggaagcaatttccataaaaatctt 237
||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctttttt----------ttttttttacaattgactaggaagcaatttccataaaaatctt 424
Query: 238 cacaattacttattatgtaaattctttcactacataatgaatatttttatttcttgattc 297
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cacaattacatattatgtaaattctttcactacataatgaatatttttatttcttgattc 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 700
Length adjustment: 9
Effective length of query: 288
Effective length of database: 691
Effective search space: 199008
Effective search space used: 199008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
