BAC Information

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BAC

Clone NameMSMg01-057B08
Chromosome8 (Build37)
Map Location 37,159,036 - 37,159,263
singlet/doubletsinglet
Overlap geneD8Ertd82e
Upstream geneLOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641
Downstream geneLonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057B08.T7 (MSMg01no057_b08.b1)MSMg01-057B08.TJ (MSMg01no057_b08.g1)
ACCAG284330AG284331
length759719
length of high quality
(start - end)
228 (130 - 357)98 (126 - 223)
definitionCHROMAT_FILE: MSMg01no057_b08.b1 PHD_FILE: MSMg01no057_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:54 2005CHROMAT_FILE: MSMg01no057_b08.g1 PHD_FILE: MSMg01no057_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTNTTTTNNNNNNNTTTTTTTCTTTCCCCCCCCNNCCCNCAAGA
ACACCACCCTCTATAATTGCGGCGCTAAACGACTCCTATAGTTCGAGAAC
CGCGGAATTCCACAATTTTCTCCTAANAAATATTGCTTCTTGTATTTTAC
AAAAAAAAAATAATAATGCAACCCCCCAAAGCTATAGTATGTATGGAAAG
TATATAGATTAATGCATTATATTCCATTAGCCAGCGTGGTCTAGGGAGAA
AGCAGGACATGACTACCCTAACACCCCACCTCACCCCAGCCCCAGCACTG
AGGGTATATAATGGTATCTACATATCTTTTTATTTTCTACTTTCTGAGCA
ATCATAGTATGAGTAGCGCGGACTTGAAGTCTGCAGTCTGATCCATTAAG
TGTATCAAAGCTCTGAGGCACCCTATTAAAGCCTAACTTGCTTTCTCTGC
GGTCTTCTGTTAAATCTCTTTAGACCCCCCTGCAAGGTAGAGTTGAGAAC
TGTGATCATTTATGCCCTTTCCTACTTGAGTTTGAACTGAATCCGCTGCA
AAACTCCTCAGCCTTAGACCTTTGGCATCCACAATAGGTTTTGCAACACC
ATGGTTGCACTTTACTTGGTAGAACTGACATAATGATTGATCGTCTGTTG
TCTGCAAATTGTTCATCCGTCTTCCATTCGCATCCTCCACTACACACATA
TCAATCTTAGATTCTATTTTCCAAGCATAATTGTGTTTCCCTTGCTCACG
TTGGTGCCA
TCTCATGATAGGCGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCCATTCTCTTGGGCTCCTGTCTTTGGTACGAG
TGAGGAAACCATAGCTTGGTGGGGATGTTGGATGTCACTCAACACAGAGG
ACCATCAGAGTGTATCCATGCAAGGACCTGAAAACATCCTTGGCAGGACT
TCTATGTCAAAGACTTTGGGATTGGATCCAAAATTGCCCAGGTAATTTTA
CCTGTTCTTGAAGGTCTTGGAAGGCATAACGGATGTTCTGTTACTAGGCA
AACCTAGACATATCATCTGCAGCACGCCTCTGACTTCCCCTCCATCACTG
CTCTGCATAATGGAATCTGCTCCTCTATGCCACTCTGTCATAACCATTGT
GCCCTTCACCATCATAATATTTCTCACTCCTTTATCGGTTTTTGCCCTGC
GTATTCCCTACTTACTATCTTGCTCACTTTCTACTCTTCATTCTTGAACT
CTCTTCGTATGCTTCGTCTTACTCGATACCTACTTCTCCTGCTTCTATCC
TCTTCTCACAACCTCGCTCGCACCTGCTTGTTCCCGTCATCTCTCTCTTT
GTCCCCTGTCGTCCACTCGTCATCTCTTATGACCTCCTCCTGCGCTCATC
GTACTCCTCGTCCTCCTCCTCTCCTCAGCCTCCATCTTTTCTCACATCTA
TTCTCTTTCATCTTCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_b08.b1 MSMg01no057_b08.b1 CHROMAT_FILE:
MSMg01no057_b08.b1 PHD_FILE: MSMg01no057_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:54 2005
         (228 letters)



>mm_chr8_37158836_37159463
          Length = 628

 Score =  433 bits (224), Expect = e-126
 Identities = 227/228 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattgcttcttgtattttacaaaaaaaaaataataatgcaaccccccaaagctatagta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 428 atattgcttcttgtattttacaaaaaaaaaataataatgcaaccccccaaaggtatagta 369

                                                                       
Query: 61  tgtatggaaagtatatagattaatgcattatattccattagccagcgtggtctagggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgtatggaaagtatatagattaatgcattatattccattagccagcgtggtctagggaga 309

                                                                       
Query: 121 aagcaggacatgactaccctaacaccccacctcaccccagccccagcactgagggtatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aagcaggacatgactaccctaacaccccacctcaccccagccccagcactgagggtatat 249

                                                           
Query: 181 aatggtatctacatatctttttattttctactttctgagcaatcatag 228
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aatggtatctacatatctttttattttctactttctgagcaatcatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)