BAC Information

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BAC

Clone NameMSMg01-057E17
Chromosome8 (Build37)
Map Location 114,048,409 - 114,048,715
singlet/doubletsinglet
Overlap genenone
Upstream geneHydin, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59
Downstream geneZnrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057E17.T7 (MSMg01no057_e17.b1)MSMg01-057E17.TJ (MSMg01no057_e17.g1)
ACCAG284486AG284487
length722708
length of high quality
(start - end)
61 (68 - 128)315 (67 - 381)
definitionCHROMAT_FILE: MSMg01no057_e17.b1 PHD_FILE: MSMg01no057_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:11 2005CHROMAT_FILE: MSMg01no057_e17.g1 PHD_FILE: MSMg01no057_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATTTGCGCCGCTAATCGACTCCTATTCACACGGATCCGCGGAATTCCA
TTCATTCGNAATTCAGACTGTCCTAAGGACTCAGGCCCAATGTCCTCTTA
CCTCTAGTGTCTTCAGAAAAAAAAAGGAGAGGAAAGGTAGGAGGAGTAGG
AGGATGACTACGTCTTTCTCTCCTCTCTTCCCCTCCTTTCTCTTCTCCCC
TTCCTCTCTCCTTCTTCCCGCCCTTCTTTTTGTCTTTTTTTTCTTTTTTT
TTCCTCTTCCTCCCTTCTCTTTCTTTTTTTCTTTTTCCCCTTCCTTTCCC
CCCCTTTTCTTTTTTTTTTTTTCTCTTCTCTTTCTCTCTCTCTCTTCTTT
TTTTTCTCCCCCCCCCCTCCTTTCCTTTTTTTCTCCTCTTTTTTTTTTCT
TTTCTTCCCCCCTTCTTTTTTCTTTTTTTTCTTCTTCTTTTTCCCTCTCT
TTTCCCTTCCTTCTTCTCTTTTCCCTCTCCTCCCTTTTTCTCCTCCCTCT
TTTTCTTCCTCCTCCCTCTCTTTTTCTCCTTTTTTTCCCTCTCTCTTCTC
TTCTTCCTTTCTTTTTCCTCCTTTTTTCTTCCTCCTCTCTCCCCTTCTCT
TTTTTTTTTCTTTTTCCCTTTCTTCTTTTTTTTTTTTCTTTCTTTTTCTT
CTTCTCTCCTACTTTTTTTTTTCCCTTTTCTCCCTTTTCCCTCTCCCTCT
TTCTCCTTTCTTCCTCCTCTTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCTGCACACTATGCTGCTGTTTAATTCAATAA
TTATTTACTTAATTTAATATCTCCAAGCCTCAGACAGGCCCCTGGTCTGT
TTTGTTGGAATCTGCTTGGCCCAGCATATGCAGGCTACTCCGTGAACATC
TGCCCTGAATGGATGCAACCTGCAGTGCTCATGATCCACAGACCTTTCTA
AGTCAGAGGGGTACCTTCTGTGCAACCAAAAGTAACGTAAGACTATTCAA
ATGCTTTGTGTCTTAGTCTTTTTAAAAAGATTTTAAGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTCCCCCCCCCCCTTCTC
TTTCCCCCCCCCTTTCATTTTTCCTTCTTTCCCTCTTTTTTCCCCTCTTC
CCTCCTCTCCCCCCTTTTCTCTTTTTTTTTTTTTCTTTTCACTTCTTCTA
TATAACCCTTCTTTTCTCCTTATTTTTCTTCATTCTCTCTCTATTCTTCT
CTATCCCCCTTTTTTACTGTCTATCTACCTTTCTCTACATTTTCCCCTCA
TTTTTTTTTTATCTCCCCCTTTCCCCCTTTTTCCCCTTTTTCTCTCTTTC
CCCTACATTCCATTTCCATTTCTCCCTTTGTCCCCAATTCCTTAATCTCC
CTTATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_e17.g1 MSMg01no057_e17.g1 CHROMAT_FILE:
MSMg01no057_e17.g1 PHD_FILE: MSMg01no057_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:12 2005
         (315 letters)



>mm_chr8_114048209_114048924
          Length = 716

 Score =  578 bits (299), Expect = e-169
 Identities = 305/307 (99%), Gaps = 1/307 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctgca-cactatgctgctgtttaattcaataattatttacttaatttaatatctcca 59
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctgcagcactatgctgctgtttaattcaataattatttacttaatttaatatctcca 260

                                                                       
Query: 60  agcctcagacaggcccctggtctgttttgttggaatctgcttggcccagcatatgcaggc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcctcagacaggcccctggtctgttttgttggaatctgcttggcccagcatatgcaggc 320

                                                                       
Query: 120 tactccgtgaacatctgccctgaatggatgcaacctgcagtgctcatgatccacagacct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactccgtgaacatctgccctgaatggatgcaacctgcagtgctcatgatccacagacct 380

                                                                       
Query: 180 ttctaagtcagaggggtaccttctgtgcaaccaaaagtaacgtaagactattcaaatgct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctaagtcagaggggtaccttctgtgcaaccaaaagtaacgtaagactattcaaatgct 440

                                                                       
Query: 240 ttgtgtcttagtctttttaaaaagattttaagtgtgtgtgtgtgtgtgtgtgtgtgtgtg 299
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtgtctgagtctttttaaaaagattttaagtgtgtgtgtgtgtgtgtgtgtgtgtgtg 500

                  
Query: 300 tgtgtgt 306
           |||||||
Sbjct: 501 tgtgtgt 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 716
Length adjustment: 9
Effective length of query: 306
Effective length of database: 707
Effective search space:   216342
Effective search space used:   216342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)