BAC Information

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BAC

Clone NameMSMg01-057K14
Chromosome8 (Build37)
Map Location 22,868,837 - 22,869,358
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041654, EG574083, AY761185, Defcr21, LOC100038926, Defcr23, LOC100041688, Defcr25, LOC626605, LOC634825, LOC100040619, LOC100038927, Defcr22, Defcr-rs7, LOC100041759, LOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739
Downstream geneDefb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057K14.T7 (MSMg01no057_k14.b1)MSMg01-057K14.TJ (MSMg01no057_k14.g1)
ACCAG284763AG284764
length668674
length of high quality
(start - end)
465 (47 - 511)520 (55 - 574)
definitionCHROMAT_FILE: MSMg01no057_k14.b1 PHD_FILE: MSMg01no057_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:41 2005CHROMAT_FILE: MSMg01no057_k14.g1 PHD_FILE: MSMg01no057_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACTAATCCAAGAGGAGCCGCGGAATTCACTCTGTCACTTGCGCATAAG
GCTTGTTTACTAGTTAGGCGCAGCGGAAGCCAGCACCATCTTATAATGGC
GATTGCTCACGGCACGGCTCTCCACATCTCCCCATTTTTATTTTATTAAA
ATTTGAGGCTGGTCTAGGCCTCTGCAGTCATGTCCATCTGCTGTGGCTCC
TGTCTTAGGCCATTCCTCCAATGTCACAGCCTTTCCTGTCATAGGGTAAC
CCTATCGCCACTGGGTTCCGTGTCTTAGGTTGGTCTGTGCATGATGATAG
TTGCCTGTCCCTGGATACCGCAGTGCTATGTGACAGTAACTACTAAATGA
CCTAGGGTGAACTCTATAAAAAAGGCCAGCCAAAAAACGAACCACTAAAC
CTCAGCGAAGTGCAAGTGCTGAGCAATGAACGTTGAGTCTCTTACATCCC
AGTGCAATGGATCCACAAATCCATGGGACGCAATAGCAGAGAACTCAGAT
GCCATTTAGGTCTTAAGCATGGACAGCCAAATTTCAGGGGAGGCCCCTTG
TTCAATGGCTGCAAGTGCCTGAGTAATAACGACTTTGTCACAGTTTTGTG
GGGTTCTGAGCTTACAAACCAACCATAGCTTATACACAAGTCCACAGCAG
ATGGCAACAGCAAATAAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCAGTGTGGAATCCAGGTTCCTTCCACCTGGTGAGTGAACACTCCTC
ATACACAATTTCCTGATGTCACTCAGACAGCAGACAGAGAGGGAGGCACA
GACCCCAAAGCATATATCCACTGTAATAAGGCTTATTGTGCATAAAATGT
CCCATTCTGAATTTCACCCATCAGAACCAATAAGACAGACAATATGGAAA
CCATGTGACAAAGGAAGCTTGCTTTGTGCTAAAGAATAAGAAGCAGATTA
TGGAGCAATCAATTGATTGATTGACTTTCTGATCACCAAATATCTTCCTT
TTGACAAAGATCATACTTGTCTCTTTCCCTAGGGAGAAAAATCTAAGCCT
TATCTACCTCTGTGTGAAGGGCAGTGAATCTCTACCTGTGTGCTATGACC
CCCTTTGGGGGTCACGTATAAAATATGCTGCACATCAGATGTTTACATTA
TGATTCATAACACTAGCAAAATTACAGTTATAAAGTAGTAATGAAATCAT
TTCATGGTTGGAGGTCACCACAACATGAGAAGGTGTATTAAAGGTTCACA
GCCTTAAGAAGGTTTAGGTTGTAAAGACCTGTTGGCTGTTATTATAATAT
GATCCAAAACAGTGTATTCTTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_k14.g1 MSMg01no057_k14.g1 CHROMAT_FILE:
MSMg01no057_k14.g1 PHD_FILE: MSMg01no057_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:41 2005
         (520 letters)



>mm_chr8_22868637_22869556
          Length = 920

 Score =  913 bits (472), Expect = 0.0
 Identities = 509/522 (97%), Gaps = 2/522 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgtggaatccaggttccttccacctggtgagtgaacactcctcatacacaatttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgtggaatccaggttccttccacctggtgagtgaacactcctcatacacaatttcct 260

                                                                       
Query: 61  gatgtcactcagacagcagacagagagggaggcacagaccccaaagcatatatccactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgtcactcagacagcagacagagagggaggcacagaccccaaagcatatatccactgt 320

                                                                       
Query: 121 aataaggcttattgtgcataaaatgtcccattctgaatttcacccatcagaaccaataag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 aataaggcttattgtgcataaaatgtcccattctgaatttcacccatcaaaaccaataag 380

                                                                       
Query: 181 acagacaatatggaaaccatgtgacaaaggaagcttgctttgtgctaaagaataagaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagacaatatggaaaccatgtgacaaaggaagcttgctttgtgctaaagaataagaagc 440

                                                                       
Query: 241 agattatggagcaatcaattgattgattgactttctgatcaccaaatatcttccttttga 300
           |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 agattacggagcaatcaattgattgattgactttctgatcaccaaataccttccttttga 500

                                                                       
Query: 301 caaagatcatacttgtctctttccctagggagaaaaatctaagccttatctacctctgtg 360
           ||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 501 caaagatcacacttgtctctttccctagggagaaaaatctaagttttatctacctctgtg 560

                                                                       
Query: 361 tgaagggcagtgaatctctacctgtgtgctatgaccccctttggggg--tcacgtataaa 418
           |||||||||||||||||||||||||||||||||| ||| ||||||||  |||||||||||
Sbjct: 561 tgaagggcagtgaatctctacctgtgtgctatgagcccttttgggggggtcacgtataaa 620

                                                                       
Query: 419 atatgctgcacatcagatgtttacattatgattcataacactagcaaaattacagttata 478
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 621 atatgctgcatatcagatgtttacattatgattcataacactagcaaaattacagttatg 680

                                                     
Query: 479 aagtagtaatgaaatcatttcatggttggaggtcaccacaac 520
           ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 aagtagtgatgaaatcatttcatggttggaggtcaccacaac 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)