BAC Information

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BAC

Clone NameMSMg01-058I16
Chromosome8 (Build37)
Map Location 124,686,090 - 124,823,374
singlet/doubletdoublet
Overlap geneGm22, Zfpm1
Upstream gene1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp
Downstream geneTrhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058I16.T7 (MSMg01no058_i16.b1)MSMg01-058I16.TJ (MSMg01no058_i16.g1)
ACCAG285433AG285434
length701711
length of high quality
(start - end)
247 (74 - 320)216 (72 - 287)
definitionCHROMAT_FILE: MSMg01no058_i16.b1 PHD_FILE: MSMg01no058_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:49 2005CHROMAT_FILE: MSMg01no058_i16.g1 PHD_FILE: MSMg01no058_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,823,130 - 124,823,374)(124,686,090 - 124,686,305)
sequence
TTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAGAGGATCCGC
GGAATTCCCCTTTGCACCAATTCAGCCTATTTAAGGACTCTCCTCCTTCA
GGGTCCCAGACTCAGTGTGGTCATCTGGGTCCTCTGGGACCACCACCTTA
TCACAGTTGTACACAACAAGTTCAGACACCCTTGTGGCCCTTAAGGCTTA
GCAGGTGTCCAGTGTCCCCGGGAAGAGTGAAGGGCCACTTGAAGCTCAGG
GTGGTCTCAACCTTGTCCTCAAACTCAAGTGGGCGCTAAAGAGACAGCCA
AACTGGTGGTAGAGATGATTATTCAATTGGAGGAACAGATCTCACAGAGC
CCAGGAGGGACGCTGCCCACACTAGGCTGGCCACAATAGAGCTGGCCATA
TAGCACTGCTTGTTCACTTGAGTGCACACACCCTATCCTAGAAGGGGAAG
TGTGTCTGCCCCCTGGGGTTCCCAATGATGACAGTCAAGCTGGATTTGGA
GCTGGAGCCAGGGGCTGCCATCTTTGAGTCTATGGACTGTTCACAGCATG
AGCGGCCCCGTGTTCTGAGCAGACACAGGATGGGACAGGAGATGTTTCTC
ACCCGGCGTGTTACAGAGGGTGTCCCCACATAACCTCTGTGGGGAGCTCA
CGTCCCTTTCCAAGGATTCAGAGCCCTACATCCTTCCCTGTCATGCCAGG
T
ACATGAAAGTGGAAGGCCTGGAGGNCGNCGTCCAAAAAAGGTAGGTGAAC
TATAGATTTCCACAAGGAAGTCATCTATTCAGGGCCCTGACAAAGTTCTC
CGGTAAATGACCTAGCCCACAGCACAGGCTGAGCTTCAATCAATGTCACT
CACGCCAGAGGCTGCAGGTGGCACAAGTAACATCTGCCATTCACTCTGAG
GCAATGACAGTCAAAGATGATGGAGAGATGGCAGGATGGAGAGGTAGCTG
CCTGTCAAAGGAGGGGGCACACCTACTGTGTGTGGTCATGAGACTAGTGG
GGGCGGCCCTGGGTTTTACCATGTGTCTGCATCTTCTGCTAGGATGTTCT
CCTGTTCAGATACCTGGACAACAATTTCAGTGTTCTGTGGTACCTGCCAG
GTGATTTTCTGGGCCTCTCTGGCATGGTGCACTGCATGATGCTAATGGCC
TAGAACTCCAAGATGAACCTTGAGTCTGTAACAGGCGGGAGCAGAAAGAG
TCTGATGGTAAGTGTGCATATGGAGTGAAGACTCTGGACTCTGAGTTCTT
ACGGAAGAAGGCTCGCCTTCCAGACATGCGCCATATGTCTTCGGCTGATT
GTGAACGGAATGTGCTTCCTGCTTGCTAACAAAGGGGGTTCCCCCCTTCG
TTTCGTCTGAGTTTGCTCCCAAAACCCTCTTGCCAGGTTTCTGAAACTCC
CTTAATGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_i16.b1 MSMg01no058_i16.b1 CHROMAT_FILE:
MSMg01no058_i16.b1 PHD_FILE: MSMg01no058_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:49 2005
         (247 letters)



>mm_chr8_124822930_124823576
          Length = 647

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcctatttaaggactctcctccttcagggtcccagactcagtgtggtcatctgggtcct 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 445 agcctatttaaggactctcctccttcagggtcccacactcagtgtggtcatttgggtcct 386

                                                                       
Query: 61  ctgggaccaccaccttatcacagttgtacacaacaagttcagacacccttgtggccctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgggaccaccaccttatcacagttgtacacaacaagttcagacacccttgtggccctta 326

                                                                       
Query: 121 aggcttagcaggtgtccagtgtccccgggaagagtgaagggccacttgaagctcagggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggcttagcaggtgtccagtgtccccgggaagagtgaagggccacttgaagctcagggtg 266

                                                                       
Query: 181 gtctcaaccttgtcctcaaactcaagtgggcgctaaagagacagccaaactggtggtaga 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtctcaaccttgacctcaaactcaagtgggcgctaaagagacagccaaactggtggtaga 206

                
Query: 241 gatga 245
           |||||
Sbjct: 205 gatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no058_i16.g1 MSMg01no058_i16.g1 CHROMAT_FILE:
MSMg01no058_i16.g1 PHD_FILE: MSMg01no058_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:49 2005
         (216 letters)



>mm_chr8_124685890_124686505
          Length = 616

 Score =  364 bits (188), Expect = e-105
 Identities = 209/216 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctattcagggccctgacaaagttctccggtaaatgacctagcccacagcacaggctg 60
           ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 201 catctattcagggccctgacaaagttctccggtaaatgacctagaagacagcacaggctg 260

                                                                       
Query: 61  agcttcaatcaatgtcactcacgccagaggctgcaggtggcacaagtaacatctgccatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcttcaatcaatgtcactcacgccagaggctgcaggtggcacaagtaacatctgccatt 320

                                                                       
Query: 121 cactctgaggcaatgacagtcaaagatgatggagagatggcaggatggagaggtagctgc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactctgaggcgatgacagtcaaagatgatggagagatggcaggatggagaggtagctgc 380

                                               
Query: 181 ctgtcaaaggagggggcacacctactgtgtgtggtc 216
           |||||||||||||||||  | |||||||||||||||
Sbjct: 381 ctgtcaaaggagggggcggagctactgtgtgtggtc 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)