BAC Information

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BAC

Clone NameMSMg01-059E05
Chromosome8 (Build37)
Map Location 107,228,897 - 107,229,523
singlet/doubletsinglet
Overlap geneLOC382052
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550
Downstream geneLOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059E05.T7 (MSMg01no059_e05.b1)MSMg01-059E05.TJ (MSMg01no059_e05.g1)
ACCAG285983AG285984
length725728
length of high quality
(start - end)		492 (45 - 536)627 (78 - 704)
definitionCHROMAT_FILE: MSMg01no059_e05.b1 PHD_FILE: MSMg01no059_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:43 2005CHROMAT_FILE: MSMg01no059_e05.g1 PHD_FILE: MSMg01no059_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGA
ATTCTTTGTTCATTCTTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTT
CTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCT
ATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATG
AGGTCCCATTTATCGATTCTTGATTTTACAGCACAAGCCATTGCTGTTCT
ATTCAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCTACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATC
CACTTAGATTTGACCCCCCCACAAGGAGATAGAAATGGATCAATTCGCAT
TCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGC
TGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTTCAAGATCAAGTGA
CCATAGGTGTGTGGATTCATCTCTGGGTCTTCAATTCTGTTCCATTGGTC
TACTTGTCTTGTACTATACCAGAACTATGGGGTTTTGATCCCAATTGCAC
CTGCACCAAGTTTTATGGCTCGGAATGGCGTTTCCATCATAGTTTTTTTC
TACCTCTTGTCCATATTTTTTTTTG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGAGTGTCCCAGGTCAAATAC
CATGGTATAGGCTATTTCAAACCAAGAGACATTGTCTCAAGCAAGGTAGA
AGGAGAGGATTCACACACACACAAGTTGTGGTAGCCACACACATCCATGC
ACACAGGAACACATACATCCATACAGATGAGAAAGGGAAAGAAAACAAAT
ACCATGTGGGTAGAACAGTCTTTCTGTCTATCACCTCTGAGCAACAGAAA
TGTAGTAACAATTTCATACTTGTTCCAGTTCACACATAGCCCACTTCCTC
AATGGCATCTAGATGGACAATTGGGAAGACTCTAGTATATGCCTTAAAGG
ATGAGACAACTCCTTCCTTCTCCCTTTACAGATGGTAGTCAACCTTTCTG
GATGTGAGCCTGTGGAAAAGGAAGCCTTGATGCGCTGCCTACGAGACAAG
AGTGAAGAGCAGATGCTGGCTATTAACAATGTGGGAAGAATTATGTCCTT
AGAGGATGGGAGAGAGGACAGTGTGGGACAGCCAGTTCACACCATTCTAA
ACAAACTCACCTTTACACCTTTGTGTCCTTTTAGTTCTGGGTGCAAAATG
AACAGCAAGATAGGCTAATCTAGGTGTAAGATCTCGTCTAGGGTGGGAGT
GGGAGGTGGATATGCATCCTGCGATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_e05.g1 MSMg01no059_e05.g1 CHROMAT_FILE:
MSMg01no059_e05.g1 PHD_FILE: MSMg01no059_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:43 2005
         (627 letters)



>mm_chr8_107228697_107229723
          Length = 1027

 Score = 1158 bits (599), Expect = 0.0
 Identities = 620/627 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgagtgtcccaggtcaaataccatggtataggctatttcaaaccaagagacattgtct 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 cttgaatgtcccaggtcaaataccatggtataggctatttcaaaccaagagacattgtct 768

                                                                       
Query: 61  caagcaaggtagaaggagaggattcacacacacacaagttgtggtagccacacacatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 caagcaaggtagaaggagaggattcacacacacacaagttgtggtagccacacacatcca 708

                                                                       
Query: 121 tgcacacaggaacacatacatccatacagatgagaaagggaaagaaaacaaataccatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tgcacacaggaacacatacatccatacagatgagaaagggaaagaaaacaaataccatgt 648

                                                                       
Query: 181 gggtagaacagtctttctgtctatcacctctgagcaacagaaatgtagtaacaatttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gggtagaacagtctttctgtctatcacctctgagcaacagaaatgtagtaacaatttcat 588

                                                                       
Query: 241 acttgttccagttcacacatagcccacttcctcaatggcatctagatggacaattgggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 acttgttccagttcacacatagcccacttcctcaatggcatctagatggacaattgggaa 528

                                                                       
Query: 301 gactctagtatatgccttaaaggatgagacaactccttccttctccctttacagatggta 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 527 gactctagtatatgccttaaaggatgagacaactccttcctgctccctttacagatggta 468

                                                                       
Query: 361 gtcaacctttctggatgtgagcctgtggaaaaggaagccttgatgcgctgcctacgagac 420
           ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 467 gtcaacctttctggatgtgagcctgtggagaagtaagccttgatgcgctgcctacgagac 408

                                                                       
Query: 421 aagagtgaagagcagatgctggctattaacaatgtgggaagaattatgtccttagaggat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 407 aagagtgaagagcagatgctggctattaacaatgtgggaagaattatgttcttagaggat 348

                                                                       
Query: 481 gggagagaggacagtgtgggacagccagttcacaccattctaaacaaactcacctttaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gggagagaggacagtgtgggacagccagttcacaccattctaaacaaactcacctttaca 288

                                                                       
Query: 541 cctttgtgtccttttagttctgggtgcaaaatgaacagcaagataggctaatctaggtgt 600
           ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 287 cctttgtgtccttttagttctgggtacaaaatgaacagcaagataggccaatctaggtgt 228

                                      
Query: 601 aagatctcgtctagggtgggagtggga 627
           |||||||||||||||||||||||||||
Sbjct: 227 aagatctcgtctagggtgggagtggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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