BAC Information

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BAC

Clone NameMSMg01-059G05
Chromosome8 (Build37)
Map Location 61,327,673 - 61,328,327
singlet/doubletsinglet
Overlap gene4930431L04Rik
Upstream genenone
Downstream geneBC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059G05.T7 (MSMg01no059_g05.b1)MSMg01-059G05.TJ (MSMg01no059_g05.g1)
ACCAG286078AG286079
length7091,414
length of high quality
(start - end)		659 (51 - 709)---
definitionCHROMAT_FILE: MSMg01no059_g05.b1 PHD_FILE: MSMg01no059_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:53 2005CHROMAT_FILE: MSMg01no059_g05.g1 PHD_FILE: MSMg01no059_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTTGGATTCCCTGATTAATATAAGGCTGTTTGGCAAGGCT
TCTCAGTAACCCACCATTAAAACATGCATGGCTTTGAAGATTGCTAATGA
GTCATGTGCTGTGGAACAGATTTTGATATTCTAATAATCCCAGTCGACAT
GATGTTATAAAACCTGTGCCAAAACTAATTTAGAACAAATTCTTAGTGAA
ACACAATGTAAAATGATATTTTTTCATGATTGTGCTCAAGTATTGAGTAG
AAATGAAATATGAAACAATGTAAATCTATTAAAAGCATACAACAAAAGTA
CTATACATTGAAACAATACACTATTCATCCATAATAGCCCATTAACTTGG
TTACTTACAATATGTTGGTGTTGTTGCAGTTCTTTATAAGAATCCAATAT
TTGAGTAGACTTAAGAATCATAATTGGGTATCATATAAAGTTAGTAAAAT
TCAGAAATAAGCAATAAAATTCCAATTAAGTCACAGAACCCATAGAAATA
TAGCTTTAAAAGGGAAGACCTATTTGTTAGTACAAATTGACCTTGAGATA
CACTTATATAATTATATTTATACACATAATTTTTAATATAATGAAAAACA
GTTTTCATTATTAGAGCTGTAAATTAGAATTCTGATGGCTAACTTTTGTT
AATTATTTT

AAAATANNCCCCNATTGCCCTAGNTCGGGNNGTAGGTCCCTCGNGNCCGG
NCCCGACCCCTCGNGNNGTGCANTAAANCAGTGTGTANGNGNTCGNACAC
CCCTANTANGNANANGCGTACGTCTTCTCCGCGNANATGTGCCAANCCAN
TCGNGNTCCGTNNTANGNACGNANANANACCTCCGTNANANGNNACATCC
CGCGACGCGCGCCCCCANANGNANACGNTCGCGCGNACGATTTCCGCGTC
GCGCGTTCACGCGCGCGNACGCGCGCGCGCGNANGNNNNNNCNCNNNNCN
NNNNNNNCNCCCCTNTNCCCCCCTNNNCCCCCCNTTNCCGCCCNNCNCCC
CNNNCNCNNCCCCCCCNNNCTCTCCTCCTCCCCCTTCNCCCCCCCCCCTT
CTCCCCTTCTCTCNCCTCCCTCCCCCCCCCCCTCTTCCTTCCCTCCTTTC
CCTCTCTCTCCTCTCCCTTCTTCCTCCTCTCCCCCTNTNCCTCTCTTCCT
CCTCTCTCCCCCCCCCCCCCCCCCCTCCCTCCCCTTCTTTCCCTCCCTCT
TTCGTTCCCTTNNCGCGCTCGNGNNGCCCGCCGCCCCCNCCCCCCTCTCT
CCTTCTCTTTCTCCTTNTTCNCTCCTCCCCCCCTCTCTCCCTCCCCCCTT
TCCCCGTTTGCTCCTCCTCCTCCCTCTTGCCTCTCCCCCTCCCTCCCCCT
CCCCTGCTCTTCTCCATTCCGCCTCCCTCTCTCTTTGCTCCCTCCCCCCC
CTNTCCCCCTCCCTCTGNTCTTTCTGCTCTCTCCTCGCCCCCCCCCCCGC
GCCNGGGTGGNTNTTTTTAGTATTTCCGTGTTCTNTCCGCTCNTCCCCCT
NCTGTTTCTTCTCCTCTCCCTTTCCTCTCCTCCCTCCCCTCCTCTTCTTT
TCGCTCTCTCCTCCTCTCCATCCTCCCTCTTTATCTCCTCTCCTCTCTCC
CTCCTCTCTCCTCGCCTCTCCTCTGCGTATTCTCCTCCCCCTCGCCTCCC
TCTCCCTTCTTTTTCCTCCCCCGCGCTACTCTCTCCCCTCCCCCCTTCCT
CATCTTCTCCCCCTCTTTATTTATACCCCCCCCCTCCTCTCCCGCTCCAT
TCTCCCTCCCCCTCTCTCCTCTTATGTGTTNTGTCCTCTCTCCTCCCTCG
TCCCCCCCCCCTCNTCTCCGCNGTCCCGCCCCCCTCTCTGCTCCCTCTGC
TCTCCTCCTCTCCTCTCCCCTCCCCTACCTCTCTCTCTTTCCTCCTTCTC
TCTCCGCTCTCGTCACCTCCGCTCTGCGCCCCCGCTCCGCCTCGTCGTCT
TCTCTCTTTNTCTCTCTCCCCCCCCTCTCCTCCCCACCTCTCTCCCCTCT
CTACCTCCTCTTGTAATCCTCTCCCTCTCCTCTCCCCACCCGCTCCCTCT
CCTCCCTTGTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_g05.b1 MSMg01no059_g05.b1 CHROMAT_FILE:
MSMg01no059_g05.b1 PHD_FILE: MSMg01no059_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:53 2005
         (659 letters)



>mm_chr8_61327575_61328633
          Length = 1059

 Score = 1236 bits (639), Expect = 0.0
 Identities = 651/655 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttggattccctgattaatataaggctgtttggcaaggcttctcagtaacccac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gaattccttggattccctgattaatataaggctgtttggcaaggcttctcagtaacccac 694

                                                                       
Query: 65  cattaaaacatgcatggctttgaagattgctaatgagtcatgtgctgtggaacagatttt 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 catgaaaacatgcatggctttgaagattgctaatgagtcatgtgctgtggaacagatttt 634

                                                                       
Query: 125 gatattctaataatcccagtcgacatgatgttataaaacctgtgccaaaactaatttaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gatattctaataatcccagtcgacatgatgttataaaacctgtgccaaaactaatttaga 574

                                                                       
Query: 185 acaaattcttagtgaaacacaatgtaaaatgatattttttcatgattgtgctcaagtatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 acaaattcttagtgaaacacaatgtaaaatgatattttttcatgattgtgctcaagtatt 514

                                                                       
Query: 245 gagtagaaatgaaatatgaaacaatgtaaatctattaaaagcatacaacaaaagtactat 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gagtagaaatgaaatatggaacaatgtaaatctattaaaagcatacaacaaaagtactat 454

                                                                       
Query: 305 acattgaaacaatacactattcatccataatagcccattaacttggttacttacaatatg 364
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 453 acattgaaacaatacactattcatccataatagtccattaacttggttacttacaatatg 394

                                                                       
Query: 365 ttggtgttgttgcagttctttataagaatccaatatttgagtagacttaagaatcataat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttggtgttgttgcagttctttataagaatccaatatttgagtagacttaagaatcataat 334

                                                                       
Query: 425 tgggtatcatataaagttagtaaaattcagaaataagcaataaaattccaattaagtcac 484
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 333 tgggtatcatataaagttagtaaaattcagaaataagcaataaaatttcaattaagtcac 274

                                                                       
Query: 485 agaacccatagaaatatagctttaaaagggaagacctatttgttagtacaaattgacctt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 agaacccatagaaatatagctttaaaagggaagacctatttgttagtacaaattgacctt 214

                                                                       
Query: 545 gagatacacttatataattatatttatacacataatttttaatataatgaaaaacagttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gagatacacttatataattatatttatacacataatttttaatataatgaaaaacagttt 154

                                                                  
Query: 605 tcattattagagctgtaaattagaattctgatggctaacttttgttaattatttt 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tcattattagagctgtaaattagaattctgatggctaacttttgttaattatttt 99


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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